View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_high_24 (Length: 240)
Name: NF6302_high_24
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44625254 - 44625029
Alignment:
| Q |
1 |
tctcataataattattatcactggaaaacagccatactagtactcaattgnnnnnnnn----cataaggccacagttaattgagcacgaaaataaatttg |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44625254 |
tctcataataattattatcactggaaaacagccatactagtactcaattgaaaaaaaaaaaacataaggccacagttaattgagcacgaaaataaatttg |
44625155 |
T |
|
| Q |
97 |
caaataaaaactatcataaaattcaccccagaaaagattactggaacaacctagaatcaaacatggttggctatgacagcatttactaaattgacatcat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
44625154 |
caaataaaaactatcataaaattcaccccagaaaagattactggaacaacctagaatcaaacatggttggctatgacaccatttactaaattgacatgat |
44625055 |
T |
|
| Q |
197 |
ccttaacatatttcataccacctaac |
222 |
Q |
| |
|
||||||||||| |||||||||||||| |
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| T |
44625054 |
ccttaacatatgtcataccacctaac |
44625029 |
T |
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