View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_low_1 (Length: 514)
Name: NF6302_low_1
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 39215196 - 39214824
Alignment:
| Q |
1 |
taaaatgaacactgcagaacatgtttgtggtagaaaatgagttctacatgacaagatgcattttggggaaattgattttgaacaaacttcataggaagtg |
100 |
Q |
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| T |
39215196 |
taaaatgaacactgcagaacatgtttgtggtagaaaatgagttctacatgacaagatgcattttggggaaattgattttgaacaaacttcataggaagtg |
39215097 |
T |
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| Q |
101 |
tttgctctagaattagcaaggcaaacttcaatataaagaaagtgttacatataggaagctnnnnnnntcttatgaattggaccacattnnnnnnnttgag |
200 |
Q |
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| T |
39215096 |
tttgctctagaattagcaaggcaaacttcaatataaagaaagtgttacatataggaagctaaaataatcttatgaattggaccacattaaaaaaattgag |
39214997 |
T |
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| Q |
201 |
catgccacaaaacagctctcaagcctttcaagtttcaaccgtcaaaccagaagtatggagaccaaatagatgctcccaaggcttttagagtacaataagt |
300 |
Q |
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| T |
39214996 |
catgccacaaaacagctctcaagcctttcaagtttcaaccgtcaaaccagaagtatggagaccaaatagatgctcccaaggcttttagagtacaataagt |
39214897 |
T |
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| Q |
301 |
gctagaaggaatgttttccaaaactggaccagagattgaacaagtgagactttcgggccatggttcaattagt |
373 |
Q |
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| T |
39214896 |
gctagaaggaatgttttccaaaactggaccagagattgaacaagtgagactttcgggccatggttcaattagt |
39214824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 445 - 495
Target Start/End: Complemental strand, 39214801 - 39214751
Alignment:
| Q |
445 |
gtagaagtactaaatgtattttaaaaactagaaataagtgaaagaacgtat |
495 |
Q |
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| T |
39214801 |
gtagaagtactaaatgtattttaaaaactagaaataagtgaaagaacgtat |
39214751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 425
Target Start/End: Complemental strand, 39214822 - 39214792
Alignment:
| Q |
395 |
gaatcagatgactatgaataagtagaagtac |
425 |
Q |
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| T |
39214822 |
gaatcagatgactatgaataagtagaagtac |
39214792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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