View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6302_low_10 (Length: 292)
Name: NF6302_low_10
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 34038387 - 34038667
Alignment:
| Q |
1 |
aaacaaacacatttacaatacagacgcatcgacactggtaataatttttaaaaaataaaatatttgaatacaagtgtatgtgtcttgtcaaacaaatata |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34038387 |
aaacaaacacatttacaatagagacacatcgacactggtaataatttt-aaaaaataaaatatttgaatacaagtgtatgtgtcttgtcaaacaaatata |
34038485 |
T |
|
| Q |
101 |
gcaannnnnnnn-gacaaaaatggctatctatatttgagtctttgatacaattttcaactataaaatgtaaaataaaatgaagcttgtaataactatgat |
199 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34038486 |
gcaattttcttttgacaaaaatggctatctatatttgagtctttgatacaattttcagctataaaaagtaaaataaaatgaagcttgtaataactatgat |
34038585 |
T |
|
| Q |
200 |
tattttagcttttgcatctcaataattttagaaagtatcatgtgatttctttgtagatatctatacttattaatttgttctt |
281 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34038586 |
tcttttagcttttgcatctcaataattttagaaagtatcatgtgatttctttgtagatatctatacttattaatttgttctt |
34038667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University