View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_low_15 (Length: 262)
Name: NF6302_low_15
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 34468623 - 34468396
Alignment:
| Q |
16 |
gagcacagaaaaaagtacaaattaacttgttatataatagttaaacatgtacagaattcttaaggtacaaagacatgtgctatgatagcaagagcttctc |
115 |
Q |
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| T |
34468623 |
gagcacagaaaaaagtactaattaacttgttatataatagttaaacatgtacagaattcttaaggtacaaagaca-gtgctatgatagcaagagcttctc |
34468525 |
T |
|
| Q |
116 |
attatcatcgaagagatgataaaatccaacccatcaatgaccaatggtttaagctaatcagattctgaggaatcagatgtttgcttaccattaaactcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34468524 |
attatcatcgaagagatgataaaatccaacccatcaatgaacaatggtgtaagctaatcagattctgaggaatcagatgtttgcttaccattaaactcag |
34468425 |
T |
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| Q |
216 |
ggaaaattggtgtcaatgtagtgactgca |
244 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34468424 |
ggaaaattggtgtcaatgtagtgactgca |
34468396 |
T |
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