View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_low_17 (Length: 258)
Name: NF6302_low_17
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 16381253 - 16381091
Alignment:
| Q |
1 |
tcaagttttccttattagctatgtaatggctctaagctttcctattctagaggggattataactatgaaaacaaagggtgggtagaaaacatttgaacca |
100 |
Q |
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| T |
16381253 |
tcaagttttccttattagctatgtaatggctctaagctttcctattctagaggggattataactatgaaaacaaagggtgggtagaaaacatttgaacca |
16381154 |
T |
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| Q |
101 |
tgaaatgcaaaggaatatgtgatagtgctttgactttgtatcttgtaattttgtaatcttaag |
163 |
Q |
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| T |
16381153 |
tgaaatgtagaggaatatgtgatagtgctttgactttgtatcttgtaattttgtaatcttaag |
16381091 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 274572 - 274655
Alignment:
| Q |
1 |
tcaagttttccttattagctatgtaatggctctaagctttcctattctagaggggattataactatgaaaacaaagggtgggta |
84 |
Q |
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| T |
274572 |
tcaacttttcctagttagctatgtaatggctcttagttatccaatttttgaggggattataactatgaaaagtaagagtgggta |
274655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 17577843 - 17577687
Alignment:
| Q |
1 |
tcaagttttccttattagctatgtaatggctctaagctttcctattctagaggggattataactatgaaaacaaagggtgggtagaaaacatttgaacca |
100 |
Q |
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|||| |||| || ||||||||| |||| ||| |||| | ||||||| | ||||||||||||| ||||||| |||| ||||||| ||| || | ||||| |
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| T |
17577843 |
tcaactttttctcattagctatctaatagctttaagttatcctattattgaggggattataagtatgaaacgcaaggttgggtagcaaatatcttaacca |
17577744 |
T |
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| Q |
101 |
tgaaatgcaaaggaatatgtgatagtgctttgactttgtatcttgtaattttgtaatcttaag |
163 |
Q |
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| T |
17577743 |
tgaaaagcatatgagtatgtcatagt------attttgtatcttctaattttgtaatcttaag |
17577687 |
T |
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