View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_low_2 (Length: 462)
Name: NF6302_low_2
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_low_2 |
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| [»] scaffold0059 (4 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 251 - 434
Target Start/End: Complemental strand, 1954996 - 1954813
Alignment:
| Q |
251 |
tagtgccaccgtatgcagcaccccctccaaagtaaattgttatgtccctaggccacatgcgagaccgcagaaactggtcaggagttagcgaaaccaagag |
350 |
Q |
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| T |
1954996 |
tagtgccaccgtatgtaccaccccctccagagtaaattgttctgtccctaggccacatgcaagactgcagaaattggtcaggagttagcgaaaccaagag |
1954897 |
T |
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| Q |
351 |
agcatcatagatatgatggtagattctctagttactgcggaaaattgcagcatgttgatccatcatgaggtagtccctctgctc |
434 |
Q |
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| T |
1954896 |
agcatcatagatatgatggtagattctctggttactgcggaaaattgcagcatgttgatccatcatgaggtagtccctctgctc |
1954813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 1955384 - 1955222
Alignment:
| Q |
10 |
catcatcacacacctgagtttgctcaatattttggctctttcgagcacttctactttgatgttcattagccattttctttttaggacacaaaagcaagat |
109 |
Q |
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| T |
1955384 |
catcatcacacacctgagtttgctcaatattttggctctttcgagcacttctactttgatgttcattagccattttctttttaggacacaaaagcaagat |
1955285 |
T |
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| Q |
110 |
ttaac-nnnnnnntcttccaaagcatattagttaaaaacaaacaacaagctaagttatttaaa |
171 |
Q |
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| T |
1955284 |
ttaacaaaaaaattcttccaaagcatattagttaaaaacaaacaacaagctaagttatttaaa |
1955222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 1960419 - 1960367
Alignment:
| Q |
40 |
tttggctctttcgagcacttctactttgatgttcattagccattttcttttta |
92 |
Q |
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| T |
1960419 |
tttggctctttcgagcacttcaactttgatgttcatgagcacttttcgtttta |
1960367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 14781 - 14911
Alignment:
| Q |
39 |
ttttggctctttcgagcacttctactttgatgttcattagccattttctttttaggacacaaaagcaagatttaacnnnnnnntcttccaaagcatatta |
138 |
Q |
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| T |
14781 |
ttttggctcttttgagcaattcaactttgatgttcatgggccattttctttttaggatacaaaagcaagatttacaaaaaaattcttccaaagcatatta |
14880 |
T |
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| Q |
139 |
gttaaaaacaaacaacaagctaagttattta |
169 |
Q |
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| T |
14881 |
gttaaaaacaaacaacaagctaagttattta |
14911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 15268 - 15358
Alignment:
| Q |
350 |
gagcatcatagatatgatggtagattctctagttactgcggaaaattgcagcatgttgatccatcatgaggtagtccctctgctcctgtct |
440 |
Q |
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| T |
15268 |
gagcatcatagagatgttggtagatgccctggttacttcgtaaaacggctgcatgctaatccatcatgaggtagtccctctgctcctgtct |
15358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 14021 - 14111
Alignment:
| Q |
350 |
gagcatcatagatatgatggtagattctctagttactgcggaaaattgcagcatgttgatccatcatgaggtagtccctctgctcctgtct |
440 |
Q |
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| T |
14021 |
gagcatcatagagatgttggaagatgccttggttacttcggaaaactgccacatgttgttccatcatgagatagtccctctgctcctgtct |
14111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 15157 - 15221
Alignment:
| Q |
251 |
tagtgccaccgtatgcagcaccccctccaaagtaaattgttatgtccctaggccacatgcgagac |
315 |
Q |
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| T |
15157 |
tagtgccaccgtgtgcaccaccccctccagagtaaactggcatgtccccaggccacatgcaagac |
15221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 183882 - 183741
Alignment:
| Q |
27 |
gtttgctcaatattttggctctttcgagcacttc-tactttgatgttcattagccattttctttttaggacacaaaagcaagatttaacnnnnnnntctt |
125 |
Q |
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| T |
183882 |
gtttgctcaatcttttggctcttccgagcacttcaaacattaatgttcatgagcaattttcttttcaagaaacaaaagcaagattaaac--aaaatttat |
183785 |
T |
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| Q |
126 |
ccaaagcatattagttaaaaacaaacaacaagctaagttatttaa |
170 |
Q |
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| T |
183784 |
ccaaagcaaatcagttaaaaac-aacaacaagctaagttatttaa |
183741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 29225418 - 29225334
Alignment:
| Q |
27 |
gtttgctcaatattttggctctttcgagcacttc-tactttgatgttcattagccattttctttttaggacacaaaagcaagatt |
110 |
Q |
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| T |
29225418 |
gtttgctcaatcttttggctcttccgagcacttcaaacattaatgttcatgagcaattttcttttcaagaaacaaaagcaagatt |
29225334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 29338717 - 29338633
Alignment:
| Q |
27 |
gtttgctcaatattttggctctttcgagcacttc-tactttgatgttcattagccattttctttttaggacacaaaagcaagatt |
110 |
Q |
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| T |
29338717 |
gtttgctcaatcttttggctcttccgagcacttcaaacattaatgttcatgagcaattttcttttcaagaaacaaaagcaagatt |
29338633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 36738935 - 36739015
Alignment:
| Q |
14 |
atcacacacctga--gtttgctcaatattttggctctttcgagcacttct-actttgatgttcattagccattttcttttta |
92 |
Q |
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| T |
36738935 |
atcacacacctgaatgtttgctcaatattt-gactctttcgagcacttctaactttgatattcatgagcatttttctcttta |
36739015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 27352176 - 27352092
Alignment:
| Q |
27 |
gtttgctcaatattttggctctttcgagcacttc-tactttgatgttcattagccattttctttttaggacacaaaagcaagatt |
110 |
Q |
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||||||||||| ||||||||||| |||||||||| || || |||||||| | | |||||||||| | || |||||| ||||||| |
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| T |
27352176 |
gtttgctcaatcttttggctcttccgagcacttcaaacattaatgttcatgaccaattttcttttcaagaaacaaaaacaagatt |
27352092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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