View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_low_28 (Length: 239)
Name: NF6302_low_28
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 50193260 - 50193040
Alignment:
| Q |
2 |
cgctacaaggtcgccgtcgacgctgaagatggtcgccggagacgtgaggacgatatggttgagattcgcaagaacaagcgtgaagagagtttgcagaaga |
101 |
Q |
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| T |
50193260 |
cgctacaaggtcgccgtcgacgctgaagatggtcgccggagacgtgaggacaatatggttgagattcgcaagaacaagcgtgaagagagtttgcagaaga |
50193161 |
T |
|
| Q |
102 |
agcgtcgtgaaggccttcaaaatcaacaacagttacccgttaccttcgattcaaaggtacttcacagtttctcttcgcattgtcgtttcttttgcacaaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50193160 |
agcgtcgtgaaggccttcaaaatcaacaacagttacccgttaccttcgattcaaaggtacttcacagtttctcttcgcattatcgtttcttttgcacaaa |
50193061 |
T |
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| Q |
202 |
ttagggtttaatcgtttacgt |
222 |
Q |
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||||||||||||||||||||| |
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| T |
50193060 |
ttagggtttaatcgtttacgt |
50193040 |
T |
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