View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6302_low_4 (Length: 452)

Name: NF6302_low_4
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6302_low_4
NF6302_low_4
[»] chr6 (6 HSPs)
chr6 (234-439)||(27109751-27109956)
chr6 (234-439)||(27151548-27151753)
chr6 (1-136)||(27109619-27109754)
chr6 (1-136)||(27151416-27151551)
chr6 (70-152)||(27112840-27112922)
chr6 (70-152)||(27154633-27154715)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 234 - 439
Target Start/End: Original strand, 27109751 - 27109956
Alignment:
Q  234 tgttctgaattaggtgctttttcttattgaaattcaagtaaagcatttcatttaagattatattatcaatatgcaaatatgaataaactcaatgatatag 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27109751 tgttctgaattaggtgctttttcttattgaaattcaagtaaagcatttcatttaagattatattatcaatatgcaaatatgaataaactcaatgatatcg 27109850  T
Q  334 agactaattgtttctttgtgttttaatgcaaacttcgatacaaagtttggtttaccatcgggagcgggatttggatcctcaacaaccatactccccactg 433  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27109851 agactaattgtttctttgtgtcttaatgcaaactttgatacaaagtttggtttaccatcgggaacgggatttggatcctcaacaaccatactccccactg 27109950  T
Q  434 ccatct 439  Q
    ||||||    
T  27109951 ccatct 27109956  T

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Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 234 - 439
Target Start/End: Original strand, 27151548 - 27151753
Alignment:
Q  234 tgttctgaattaggtgctttttcttattgaaattcaagtaaagcatttcatttaagattatattatcaatatgcaaatatgaataaactcaatgatatag 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27151548 tgttctgaattaggtgctttttcttattgaaattcaagtaaagcatttcatttaagattatattatcaatatgcaaatatgaataaactcaatgatatcg 27151647  T
Q  334 agactaattgtttctttgtgttttaatgcaaacttcgatacaaagtttggtttaccatcgggagcgggatttggatcctcaacaaccatactccccactg 433  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27151648 agactaattgtttctttgtgtcttaatgcaaactttgatacaaagtttggtttaccatcgggaacgggatttggatcctcaacaaccatactccccactg 27151747  T
Q  434 ccatct 439  Q
    ||||||    
T  27151748 ccatct 27151753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 27109619 - 27109754
Alignment:
Q  1 ccttgccatgtttgtggtttctgtcctttcctccttcaatcgaaacaaaaaaggcatttttgggtgatgacaacaaatcaattgaagtagagatactaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27109619 ccttgccatgtttgtggtttctgtcctttcctccttcaatcgaaacaaaaaaggcatttttgggtgatgacaacaaatcaattgaagtagagatactaat 27109718  T
Q  101 aaatacttgttagatgaatttttcatgtaatttgtt 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  27109719 aaatacttgttagatgaatttttcatgtaatttgtt 27109754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 27151416 - 27151551
Alignment:
Q  1 ccttgccatgtttgtggtttctgtcctttcctccttcaatcgaaacaaaaaaggcatttttgggtgatgacaacaaatcaattgaagtagagatactaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27151416 ccttgccatgtttgtggtttctgtcctttcctccttcaatcgaaacaaaaaaggcatttttgggtgatgacaacaaatcaattgaagtagagatactaat 27151515  T
Q  101 aaatacttgttagatgaatttttcatgtaatttgtt 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  27151516 aaatacttgttagatgaatttttcatgtaatttgtt 27151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 27112840 - 27112922
Alignment:
Q  70 acaacaaatcaattgaagtagagatactaataa-atacttgttagatgaatttttcatgtaatttgttgttcatcttgctttta 152  Q
    ||||||||||||||||||||||| || |||||| | | |||||||||||| |||||||||| |||| | |||||||||||||||    
T  27112840 acaacaaatcaattgaagtagagctattaataagagatttgttagatgaa-ttttcatgtattttgattttcatcttgctttta 27112922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 27154633 - 27154715
Alignment:
Q  70 acaacaaatcaattgaagtagagatactaataa-atacttgttagatgaatttttcatgtaatttgttgttcatcttgctttta 152  Q
    ||||||||||||||||||||||| || |||||| | | |||||||||||| |||||||||| |||| | |||||||||||||||    
T  27154633 acaacaaatcaattgaagtagagctattaataagagatttgttagatgaa-ttttcatgtattttgattttcatcttgctttta 27154715  T

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