View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_low_6 (Length: 364)
Name: NF6302_low_6
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 53731807 - 53731959
Alignment:
| Q |
18 |
tatattcatattattttggatttttaatcttcaatcaatgttctcgttaattttttggaggcactataaagcttaagggttaatttaattgttctccatt |
117 |
Q |
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| T |
53731807 |
tatattcatattattttggatttttaatcttcaatcaatgttctcgttaattttttggaggcactataaagcttaagggttaatttagttgttctccgtt |
53731906 |
T |
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| Q |
118 |
-------agtgagaagagcaacaacaacagttgctacagtaccagcatacaaa |
163 |
Q |
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| T |
53731907 |
aaattacagtgagaagagcagcaacaacagttgctacagtaccagcatacaaa |
53731959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 217 - 350
Target Start/End: Original strand, 53732014 - 53732147
Alignment:
| Q |
217 |
gatgtgtaaggtgttgccgtcatctgccgccaccgtccctctccttgctgtcatctttgcctccctccacctctctctaagagctccccaaatgnnnnnn |
316 |
Q |
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| T |
53732014 |
gatgtgtaaggtgttgccgtcatctgccaccaccgtccttctccttgctgtcgtctttgcctccctccacctctctcttagatctacccaaatgaagaaa |
53732113 |
T |
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| Q |
317 |
nntatatataatgcggagggattatagtaagatc |
350 |
Q |
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| T |
53732114 |
aaaaaatatagtgcggagggattatagtaagatc |
53732147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 32966563 - 32966643
Alignment:
| Q |
21 |
attcatattattttggatttttaatcttcaatcaatgttctcgttaattttttggaggcactataaagcttaagggttaatt |
102 |
Q |
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| T |
32966563 |
attcatattattttggatttttaattttcaatcattgttc-cattaattttttggaggcactaaaaagcttaagggttaatt |
32966643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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