View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_low_7 (Length: 342)
Name: NF6302_low_7
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 332
Target Start/End: Complemental strand, 24564361 - 24564048
Alignment:
| Q |
15 |
agatttttatttctagtgttgaaaattgtttgaatgagtcagagtactaaaatacttatagtagcttcttctctttgtctctcttggataaactaagttt |
114 |
Q |
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| T |
24564361 |
agatttttatttctagtgttgaaaattgtttgaatgagtcagagtactaaaatacttatagtagcttcttctctttgtctctcttggataaactaagctt |
24564262 |
T |
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| Q |
115 |
caaacttcattttaaaccattgctagcccttggtaaaaatgttctatttccc-ttgtttttgttctttattgtactcacttatacaaattatctaacact |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564261 |
caaacttcattttaaaccattgctagcccttggtaaaaatgttctatttccctttttttttgttctttattgtactcacttatacaaattatctaacact |
24564162 |
T |
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| Q |
214 |
attgtccatgtaatttcattttatgtaggtattctttgatttgaaaagtgaaggaagttgaaagnnnnnnnnnnnnnnctaagattcaatgaacaataac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
24564161 |
attgtccatgtaatttcattttatgtaggtattctttgatttgaaaagtgaaggaagttgaaag-----aaaaaaaaacaaagattcaatgaacaataac |
24564067 |
T |
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| Q |
314 |
tggctttcattccctctct |
332 |
Q |
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||||||||||||||||||| |
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| T |
24564066 |
tggctttcattccctctct |
24564048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 23598620 - 23598579
Alignment:
| Q |
41 |
tgtttgaatgagtcagagtactaaaatacttatagtagcttc |
82 |
Q |
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|||||||| |||||||||||| |||||||||| ||||||||| |
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| T |
23598620 |
tgtttgaacgagtcagagtacaaaaatacttacagtagcttc |
23598579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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