View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_low_8 (Length: 331)
Name: NF6302_low_8
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 131 - 322
Target Start/End: Original strand, 14038352 - 14038542
Alignment:
| Q |
131 |
atttattattttatttaaataacaatatatgatcaactagtgtgaaaaataacaatgatggaataacttgttttctctaccaggaacctccgagatcnnn |
230 |
Q |
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| T |
14038352 |
atttattattttatttaaataacaatatatgatcaactagtgtgaaaaataacaatgatggaataacttgttttctctaccaggaacctccgagatc-aa |
14038450 |
T |
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| Q |
231 |
nnnnnnnnnnnnnnnnncctcttgatcgcgaagatgaaccccgtgttccttccgcgacaaagttaatggttctaaacccccgcctcctatgc |
322 |
Q |
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| T |
14038451 |
aaaaaaaaaaaaaaaaacctcttgatcgcgaagatgaaccccgtgttccttccgcgacaaagttaatggttctaaacccccgcctcctatgc |
14038542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 14038211 - 14038327
Alignment:
| Q |
18 |
atgctatcatacagagtggatcagcttcttaacaagcaaaagcattgaatgttcca---nnnnnnnnngagggaacattgaatgttccatgttgattgtt |
114 |
Q |
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| T |
14038211 |
atgctatcatacagagtggatcagcttcttaacaagcaaaaacattgaatgttccattttttttttttgagggaacattgaatgttccatgttgattgtt |
14038310 |
T |
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| Q |
115 |
aaattggggtgtctcaa |
131 |
Q |
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| T |
14038311 |
aaattggtgtgtctcaa |
14038327 |
T |
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