View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6303_low_1 (Length: 447)

Name: NF6303_low_1
Description: NF6303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6303_low_1
NF6303_low_1
[»] chr4 (19 HSPs)
chr4 (189-294)||(36404321-36404426)
chr4 (310-431)||(36369223-36369344)
chr4 (194-294)||(36425806-36425906)
chr4 (191-294)||(36397390-36397493)
chr4 (194-294)||(36369035-36369135)
chr4 (194-294)||(36411640-36411740)
chr4 (194-294)||(36416971-36417071)
chr4 (194-283)||(36373654-36373743)
chr4 (310-431)||(36387802-36387923)
chr4 (189-294)||(36433658-36433763)
chr4 (310-429)||(36433851-36433970)
chr4 (310-430)||(36373842-36373962)
chr4 (310-431)||(36425994-36426115)
chr4 (314-430)||(36397585-36397701)
chr4 (194-293)||(36387613-36387712)
chr4 (310-431)||(36404514-36404635)
chr4 (310-428)||(36411828-36411946)
chr4 (310-428)||(36417159-36417277)
chr4 (157-194)||(36433351-36433388)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 36404321 - 36404426
Alignment:
Q  189 attcagaaccaacagaccaatgtgatagctatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttact 288  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||||| |||||||| ||||||||||| |||||||||||    
T  36404321 attcagaaccaacagaccaatgtgataactatggaacatgtggatcaaacagtaattgtgacccttttaactttgacgactttaagtgcacttgtttact 36404420  T
Q  289 tggttt 294  Q
    ||||||    
T  36404421 tggttt 36404426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 36369223 - 36369344
Alignment:
Q  310 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 409  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||  ||||  |||||||  |||| ||||||||||| ||| |||||||||    
T  36369223 tggagaagggtttgtcaaagttgtgagcttgaaagttcccgatacatctgtggcggttgctaaaggtggtttgagtttggaagaatgtgagaaagaatgc 36369322  T
Q  410 ttaagaaactgctcttgtactg 431  Q
    || |||||||||||||||||||    
T  36369323 ttgagaaactgctcttgtactg 36369344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 36425806 - 36425906
Alignment:
Q  194 gaaccaacagaccaatgtgatagctatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggtt 293  Q
    ||||||||||||||||||| || ||| |||| |||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  36425806 gaaccaacagaccaatgtgctaactacggaacatgtggatcaaatagtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtt 36425905  T
Q  294 t 294  Q
    |    
T  36425906 t 36425906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 36397390 - 36397493
Alignment:
Q  191 tcagaaccaacagaccaatgtgatagctatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttg 290  Q
    |||||||||||| |||||||||||| ||||||||  ||||||| |||||||||| |||||||||||||||||||| |||||||||| || ||||||||||    
T  36397390 tcagaaccaacaaaccaatgtgataactatggaacgtgtggatcaaacagtaattgtgaccctttgaactttgagaactttaagtgcacgtgtttacttg 36397489  T
Q  291 gttt 294  Q
    ||||    
T  36397490 gttt 36397493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 36369035 - 36369135
Alignment:
Q  194 gaaccaacagaccaatgtgatagctatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggtt 293  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||||||| |||||| ||| |||||||| ||||||||||| ||||||||||||||||    
T  36369035 gaaccaacagaccaatgtgataactatggaacctgtggatcaaacagtaattgtgacctttttaactttgaagactttaagtgcacttgtttacttggtt 36369134  T
Q  294 t 294  Q
    |    
T  36369135 t 36369135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 36411640 - 36411740
Alignment:
Q  194 gaaccaacagaccaatgtgatagctatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggtt 293  Q
    ||||||||||||||||||| || ||| |||| |||||||  |||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  36411640 gaaccaacagaccaatgtgctaactacggaacatgtggaccaaacagtaattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggtt 36411739  T
Q  294 t 294  Q
    |    
T  36411740 t 36411740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 36416971 - 36417071
Alignment:
Q  194 gaaccaacagaccaatgtgatagctatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggtt 293  Q
    ||||||||||||||||||| || ||| |||| |||||||  |||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  36416971 gaaccaacagaccaatgtgctaactacggaacatgtggaccaaacagtaattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggtt 36417070  T
Q  294 t 294  Q
    |    
T  36417071 t 36417071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 36373654 - 36373743
Alignment:
Q  194 gaaccaacagaccaatgtgatagctatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgt 283  Q
    ||||||||| |||||||||||| ||||||||  ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  36373654 gaaccaacaaaccaatgtgataactatggaacctgtggatcaaacagtaactgtgaccctttgaactttgaggactttaagtgtacttgt 36373743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 36387802 - 36387923
Alignment:
Q  310 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 409  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||  ||| |||  |||| ||||||||||| ||| |||||||||    
T  36387802 tggagaagggtttatcaaagttgtaagcttgaaagttcctgatacatctgtggcagttgctaaaagtggtttgagtttggaagaatgtgagaaagaatgc 36387901  T
Q  410 ttaagaaactgctcttgtactg 431  Q
    ||   |||||| ||||||||||    
T  36387902 ttgcaaaactgttcttgtactg 36387923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 36433658 - 36433763
Alignment:
Q  189 attcagaaccaacagaccaatgtgatagctatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttact 288  Q
    ||||| |||||||| |||||||||||| |||||||| |||||||| |||||||||| |||||||| ||||||||| |||||| || ||| |||||||||     
T  36433658 attcacaaccaacaaaccaatgtgataactatggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacc 36433757  T
Q  289 tggttt 294  Q
    ||||||    
T  36433758 tggttt 36433763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 36433851 - 36433970
Alignment:
Q  310 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 409  Q
    ||||||||||||| ||||| |||| |||||||| ||||||||||||||  ||| |  || ||||||||  |||| ||||||||||| |||||||||||||    
T  36433851 tggagaagggtttatcaaaattgtcagcttgaaagttcctgatacatcgatggcaaatgccaaaggtggtttgagtttggaagaatgtgaaaaagaatgc 36433950  T
Q  410 ttaagaaactgctcttgtac 429  Q
    || |||||||| ||||||||    
T  36433951 ttcagaaactgttcttgtac 36433970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 430
Target Start/End: Original strand, 36373842 - 36373962
Alignment:
Q  310 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 409  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||| |||||||| ||||   |||||||   ||| |||||||||||  ||  ||||||||    
T  36373842 tggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatctgtggcagttactaaaggtggtctgagtttggaagaatgcgaggaagaatgc 36373941  T
Q  410 ttaagaaactgctcttgtact 430  Q
    || ||||||||||||||||||    
T  36373942 ttgagaaactgctcttgtact 36373962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 36425994 - 36426115
Alignment:
Q  310 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 409  Q
    ||||||||||||| |||||||||||||| | || |||||||| || |||  || ||||| || || ||  ||||||||||| |||| ||| |||||||||    
T  36425994 tggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatttggatgaatgtgagaaagaatgc 36426093  T
Q  410 ttaagaaactgctcttgtactg 431  Q
    || |||||||||||||||||||    
T  36426094 ttgagaaactgctcttgtactg 36426115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 430
Target Start/End: Original strand, 36397585 - 36397701
Alignment:
Q  314 gaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgcttaa 413  Q
    ||||||||| ||||||||||||||||||| |||||||||| ||||| || ||||  || || ||  |||| |||||| |||| ||| ||||||||||| |    
T  36397585 gaagggtttatcaaagttgtaagcttgaaagttcctgatatatctggggcagttaccatagatggtttgagtttggatgaatgtgagaaagaatgcttga 36397684  T
Q  414 gaaactgctcttgtact 430  Q
    |||||||||| ||||||    
T  36397685 gaaactgctcctgtact 36397701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 293
Target Start/End: Original strand, 36387613 - 36387712
Alignment:
Q  194 gaaccaacagaccaatgtgatagctatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggtt 293  Q
    |||||| | ||| |||||| || |||||||| |||||||| |||  ||||| |||||||||| |||||||| |||||||||||| |||||||||||||||    
T  36387613 gaaccatctgacgaatgtggtaactatggaacatgtggatcaaatggtaattgtgacccttttaactttgatgactttaagtgttcttgtttacttggtt 36387712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 36404514 - 36404635
Alignment:
Q  310 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 409  Q
    ||||||||||||| | |||||||||||  |||| ||| |||||| |||||  | ||||| || || ||  |||| ||||||||||| ||| |||||||||    
T  36404514 tggagaagggtttataaaagttgtaagtgtgaaagttgctgatatatctggagcagttgccatagatggtttgagtttggaagaatgtgagaaagaatgc 36404613  T
Q  410 ttaagaaactgctcttgtactg 431  Q
    || ||||| |||||||||||||    
T  36404614 ttgagaaattgctcttgtactg 36404635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 428
Target Start/End: Original strand, 36411828 - 36411946
Alignment:
Q  310 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 409  Q
    |||||||||||||  ||||||| ||||  |||| |||||||||| ||||| || ||||| || || ||  |||| ||||||||||| ||| ||||| |||    
T  36411828 tggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggtttgactttggaagaatgtgagaaagattgc 36411927  T
Q  410 ttaagaaactgctcttgta 428  Q
    || |||||||| |||||||    
T  36411928 ttgagaaactgttcttgta 36411946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 428
Target Start/End: Original strand, 36417159 - 36417277
Alignment:
Q  310 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 409  Q
    |||||||||||||  ||||||| ||||  |||| |||||||||| ||||| || ||||| || || ||  |||| ||||||||||| ||| ||||| |||    
T  36417159 tggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggtttgactttggaagaatgtgagaaagattgc 36417258  T
Q  410 ttaagaaactgctcttgta 428  Q
    || |||||||| |||||||    
T  36417259 ttgagaaactgttcttgta 36417277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 36433351 - 36433388
Alignment:
Q  157 gatgaccctggaaaaggtgtcttcactttgaaattcag 194  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  36433351 gatgaccctggaaaaggtgccttcacgttgaaattcag 36433388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University