View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6303_low_2 (Length: 417)
Name: NF6303_low_2
Description: NF6303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6303_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 399
Target Start/End: Original strand, 10273047 - 10273450
Alignment:
| Q |
6 |
aggagcacagaatacagtatcacaggacggtgaccgttgcaacgcatagcaaagtgcatgttcacgtcctcctccaccaataaccagaacagccaccctt |
105 |
Q |
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| T |
10273047 |
aggagcacagaatacagtatcacaggatggtgaccgttgcaacgcgtagcaaagtgcatgttcacgtcctcctccaccaataaccagaacagccaccctt |
10273146 |
T |
|
| Q |
106 |
tcttcttaggaataagcnnnnnnnnnnnnnnnnnnnnnnncagtatatgcaataaagttagtatatagttcatattcatatacaacatcacaagcatgct |
205 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10273147 |
tcttcttaggaataagcaaaatgaaaaacaaaacaaaaaacagtatatgcaataaagttagtatatagttcatattcatatacaacatcacaagcatgct |
10273246 |
T |
|
| Q |
206 |
tggttccgtggcgcgnnnnnnnnttgattttgtaaaattgattt-----ataagtgagttgaatataaaatgatttatacttgaatacattttcgtacaa |
300 |
Q |
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||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10273247 |
tggttccgtggcgcgacaaaaaattgattttgtaaaattaattttacttataagtgagttgaatataaaatgatttatgcttgaatacattttcgtacaa |
10273346 |
T |
|
| Q |
301 |
gtgggttgaaattgaataataaatttcagtgtgtaaatcatgttagaatcaattacggaggcaaaatcaatg-----ataatacacctccagaatgctcg |
395 |
Q |
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| T |
10273347 |
gtgggttgaaattgaataataaatttcagtgtgtaaatcatgttagaatcaattccggaggcaaaatcaatgataatataatacacctccagaatgctcg |
10273446 |
T |
|
| Q |
396 |
aaac |
399 |
Q |
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|||| |
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| T |
10273447 |
aaac |
10273450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 13504946 - 13504978
Alignment:
| Q |
255 |
tgagttgaatataaaatgatttatacttgaata |
287 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
13504946 |
tgagttgaatataaaatgatttatatttgaata |
13504978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 34259148 - 34259182
Alignment:
| Q |
257 |
agttgaatataaaatgatttatacttgaatacatt |
291 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
34259148 |
agttgaatataaaatgatttatatttgaatacatt |
34259182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 26975310 - 26975350
Alignment:
| Q |
248 |
ttataagtgagttgaatataaaatgatttatacttgaatac |
288 |
Q |
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||||||||||||||||| ||||||||||||| |||||||| |
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| T |
26975310 |
ttataagtgagttgaatgtaaaatgatttatgtttgaatac |
26975350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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