View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6303_low_8 (Length: 213)
Name: NF6303_low_8
Description: NF6303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6303_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 8099564 - 8099375
Alignment:
| Q |
16 |
attaagataagcacaaaactttttaaaatttggattcttcataatttgcaactagtgtattttcccttttgcagcttaaaccaaacactaataatataca |
115 |
Q |
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| T |
8099564 |
attaagataagcacaaaactttttaaaattttggttcttcgtaatttgcaactagtgtattttcccttttgcagcttaaac-------------tataca |
8099478 |
T |
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| Q |
116 |
agggttatatagattacacgtaaaattcttctatttttctagcttatatagattacattaatacccct-----agcccaaaattatactgaaattagttc |
210 |
Q |
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| T |
8099477 |
agggttatatagattacacgtaaaattcttctatttttctagcttatatagattacattaataccccttttatagaccaaaattatactgaaattagttc |
8099378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 8102325 - 8102440
Alignment:
| Q |
11 |
cacagattaagataagcacaaaactttttaaaatttggattcttcataatttgcaactagtgtattttcccttttgcagcttaaaccaaacactaataat |
110 |
Q |
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| T |
8102325 |
cacaaattaagataagcacaaaactttttaaaattttgattcttcgtaatttgcaactagtgtattttcccttttgcagcttaaaccaaacgataataat |
8102424 |
T |
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| Q |
111 |
atacaagggttatata |
126 |
Q |
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| T |
8102425 |
atagaaggattatata |
8102440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 8103823 - 8103938
Alignment:
| Q |
11 |
cacagattaagataagcacaaaactttttaaaatttggattcttcataatttgcaactagtgtattttcccttttgcagcttaaaccaaacactaataat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8103823 |
cacaaattaagataagcacaaaactttttaaaattttgattcttggtaatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataat |
8103922 |
T |
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| Q |
111 |
atacaagggttatata |
126 |
Q |
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| T |
8103923 |
atagaaggattatata |
8103938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 21261245 - 21261346
Alignment:
| Q |
41 |
aaatttggattcttcataatttgcaactagtgtattttcccttttgcagcttaaaccaaacactaataatatacaagggttatatagattacacgtaaaa |
140 |
Q |
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|||||| | |||| |||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||| ||| |||||||| |||||||||||| |
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| T |
21261245 |
aaattttggttctgcataatttgcaactagtgtattttcc-tttggcagattaaaccaaacaataataatatcgaagaattatataggttacacgtaaaa |
21261343 |
T |
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| Q |
141 |
ttc |
143 |
Q |
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||| |
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| T |
21261344 |
ttc |
21261346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 42957728 - 42957681
Alignment:
| Q |
129 |
ttacacgtaaaattcttctatttttctagcttatatagattacattaat |
177 |
Q |
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| T |
42957728 |
ttacacgtaaaattcttatatttt-ctagcttatatagattacattaat |
42957681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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