View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6304_high_11 (Length: 361)

Name: NF6304_high_11
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6304_high_11
NF6304_high_11
[»] chr4 (30 HSPs)
chr4 (18-357)||(48876010-48876349)
chr4 (18-357)||(48886392-48886731)
chr4 (18-357)||(48870706-48871045)
chr4 (160-294)||(45365859-45365993)
chr4 (25-137)||(48705169-48705281)
chr4 (173-294)||(7790381-7790502)
chr4 (173-314)||(7771696-7771837)
chr4 (171-277)||(7773481-7773587)
chr4 (175-357)||(48734987-48735169)
chr4 (169-294)||(45384531-45384662)
chr4 (176-278)||(7237398-7237500)
chr4 (171-278)||(7765941-7766048)
chr4 (171-260)||(7786763-7786852)
chr4 (174-278)||(48147368-48147472)
chr4 (174-278)||(48156084-48156188)
chr4 (169-278)||(48903255-48903361)
chr4 (171-213)||(7878045-7878087)
chr4 (227-314)||(7878738-7878825)
chr4 (169-279)||(48899037-48899147)
chr4 (39-132)||(48735194-48735287)
chr4 (171-291)||(37826632-37826752)
chr4 (174-278)||(48864337-48864441)
chr4 (227-314)||(7908657-7908744)
chr4 (227-278)||(45371729-45371780)
chr4 (227-294)||(48853036-48853103)
chr4 (34-116)||(45371876-45371958)
chr4 (169-203)||(50669382-50669416)
chr4 (152-205)||(43596153-43596206)
chr4 (232-293)||(49038518-49038579)
chr4 (231-291)||(49043810-49043870)
[»] chr5 (4 HSPs)
chr5 (178-264)||(179364-179450)
chr5 (176-277)||(9120067-9120168)
chr5 (228-286)||(29688485-29688543)
chr5 (178-291)||(29712083-29712196)
[»] chr3 (4 HSPs)
chr3 (169-294)||(47451539-47451664)
chr3 (169-214)||(11024216-11024261)
chr3 (169-276)||(11015148-11015249)
chr3 (169-278)||(11005583-11005686)
[»] chr8 (6 HSPs)
chr8 (169-295)||(15349180-15349306)
chr8 (171-261)||(4962191-4962281)
chr8 (171-261)||(12195623-12195713)
chr8 (171-261)||(12440051-12440141)
chr8 (171-278)||(12200641-12200748)
chr8 (171-278)||(12445069-12445176)
[»] chr6 (1 HSPs)
chr6 (34-98)||(21015998-21016062)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 48876010 - 48876349
Alignment:
Q  18 aggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaacttttt 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  48876010 aggttccctctatcacggggctattcattggttggcttatcgtgatgatttacaaaagaatgttatccttgcctttgatttcactgaaaggcaacttttt 48876109  T
Q  118 gatatgcatttgccagatgattattataattataactatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggctatggatt 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48876110 gatatgcatttgccagatgattattacaattataactatgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgctatggatt 48876209  T
Q  218 ataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctgacga 317  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| ||||||| | |||||||||||||| || ||    
T  48876210 ataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatga 48876309  T
Q  318 gtccttttccccattgtgctgtacaaaaaatggtgatatt 357  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  48876310 gtccttttccccattgtgctgtacaaaaagtggtgatatt 48876349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 48886392 - 48886731
Alignment:
Q  18 aggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaacttttt 117  Q
    ||||||||||||| | |||||||||||||||||||||||| ||| || ||||  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  48886392 aggttccctctataatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgatttaacggaaaggcaacttttt 48886491  T
Q  118 gatatgcatttgccagatgattattataattataactatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggctatggatt 217  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48886492 gatatgcttttaccagatgattattacaattataactatgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgctatggatt 48886591  T
Q  218 ataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctgacga 317  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||||| ||    
T  48886592 ataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctgatga 48886691  T
Q  318 gtccttttccccattgtgctgtacaaaaaatggtgatatt 357  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  48886692 gtccttttccccattgtgctgtacaaaaagtggtgatatt 48886731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 48870706 - 48871045
Alignment:
Q  18 aggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaacttttt 117  Q
    ||||||||||||| | |||||||||||||||||||||||| ||| || ||||  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  48870706 aggttccctctataatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgatttaacggaaaggcaacttttt 48870805  T
Q  118 gatatgcatttgccagatgattattataattataactatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggctatggatt 217  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48870806 gatatgcttttaccagatgattattacaattataactatgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgctatggatt 48870905  T
Q  218 ataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctgacga 317  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| ||||||| | |||||||||||||| || ||    
T  48870906 ataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatga 48871005  T
Q  318 gtccttttccccattgtgctgtacaaaaaatggtgatatt 357  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  48871006 gtccttttccccattgtgctgtacaaaaagtggtgatatt 48871045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 45365993 - 45365859
Alignment:
Q  160 cctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaataca 259  Q
    |||||| | |||||||||||||||||||| |||||| ||||| | ||||||||||||||| || || |||||||||||||||||||||||||  |||| |    
T  45365993 cctcacgattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatata 45365894  T
Q  260 aagtgaactcgtcttggacaaatactcatgttctt 294  Q
    |||||   |||||||||||||| ||||| ||||||    
T  45365893 aagtgcgttcgtcttggacaaagactcacgttctt 45365859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 48705281 - 48705169
Alignment:
Q  25 ctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaactttttgatatgc 124  Q
    |||||| | |||||||||||||||||||||||| || ||||||||| ||||  ||||||  ||||||||||||||| ||||||| |||||||||||||||    
T  48705281 ctctataatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaactttttgatatgc 48705182  T
Q  125 atttgccagatga 137  Q
     ||||||||||||    
T  48705181 ttttgccagatga 48705169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 7790381 - 7790502
Alignment:
Q  173 gtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtc 272  Q
    |||||||||||||||| |||||||||||| |||| |||| ||||||| || || ||||| |||||||||||||||||||  ||||||||||| | |||||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  273 ttggacaaatactcatgttctt 294  Q
    |||||| || |||| |||||||    
T  7790481 ttggactaaaactcttgttctt 7790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 7771696 - 7771837
Alignment:
Q  173 gtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtc 272  Q
    |||||||||||||||| |||||||||||| |||| |||| ||||||| || || ||||| ||| |||||||||||||||  ||||||||||| | |||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  273 ttggacaaatactcatgttcttaccgttgatgacatttctga 314  Q
     ||||| || |||| ||||||| | ||||||| |||| ||||    
T  7771796 atggactaaaactcttgttctttctgttgatgccattcctga 7771837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 7773587 - 7773481
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||||||| |||| ||| ||| ||||||||| |||| ||  | || |||||||||||||||||||||||||  ||||||||||| | |||    
T  7773587 tggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 7773488  T
Q  271 tcttgga 277  Q
    |||||||    
T  7773487 tcttgga 7773481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 357
Target Start/End: Complemental strand, 48735169 - 48734987
Alignment:
Q  175 ttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtctt 274  Q
    |||||||||||||| |||||||||||| | | | ||||| ||| || | |||||||||||   ||||||  ||||||  ||||||||||||| |||||||    
T  48735169 ttgtgggtatttggagaatttctcagtttttcgactatgaattttagtaataatacagttatgatatggacgatgaaagaatacaaagtgaattcgtctt 48735070  T
Q  275 ggacaaatactcatgttcttaccgttgatgacatttctgacgagtccttttccccattgtgctgtacaaaaaatggtgatatt 357  Q
    |||| || ||||||| | |  | ||||||| || | |  |||||  |||||||||||| || |||||||||||||||||||||    
T  48735069 ggactaaaactcatgctgtgtctgttgatggcactcccaacgagagcttttccccattttgttgtacaaaaaatggtgatatt 48734987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 45384662 - 45384531
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataata------cagttgaaatatgggtgatgaacaaatacaaag 262  Q
    |||||||||||||||||||| |||||||||||| | || |||||| ||||| || ||| ||      ||||||||||||||||||||||  |||| ||||    
T  45384662 tgtggtttgtgggtatttggagaatttctcagtttttgagctatgcattatgataatattaatatttcagttgaaatatgggtgatgaaagaatataaag 45384563  T
Q  263 tgaactcgtcttggacaaatactcatgttctt 294  Q
    || | |||||||||||||| |||| |||||||    
T  45384562 tgcattcgtcttggacaaagactcgtgttctt 45384531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 7237500 - 7237398
Alignment:
Q  176 tgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttg 275  Q
    ||||||||||||| |||||||||||||||||||||  ||||||| || || ||||| ||| |||||||||||||||  |||||||| || | |||| |||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttg 7237401  T
Q  276 gac 278  Q
    |||    
T  7237400 gac 7237398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 7765941 - 7766048
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||| ||| |||||||||||| |||||| || ||||  || | || ||||| |||||||||||||||||||  ||||||||||| | |||    
T  7765941 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 7766040  T
Q  271 tcttggac 278  Q
    || |||||    
T  7766041 tcatggac 7766048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 7786763 - 7786852
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaa 260  Q
    |||||||||||||| |||||||||||||||| |||||| || ||||  || | || ||||| |||||||||||||||||||  |||||||    
T  7786763 tggtttgtgggtatctggggaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaa 7786852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 48147472 - 48147368
Alignment:
Q  174 tttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtct 273  Q
    |||||||||||||||  ||||||||||||||  || ||||||| || |  |||  | |||||||||||||||||||||  ||||||||||| | ||||||    
T  48147472 tttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtct 48147373  T
Q  274 tggac 278  Q
    |||||    
T  48147372 tggac 48147368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 48156188 - 48156084
Alignment:
Q  174 tttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtct 273  Q
    ||||||||||||||| |||||||||||| |||||||| | ||||    | || | | |||||||||||||||||||||| ||||||||||| | || |||    
T  48156188 tttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttct 48156089  T
Q  274 tggac 278  Q
    |||||    
T  48156088 tggac 48156084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 48903255 - 48903361
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||| ||| ||||||||||| |||||||| || ||||||||| |||||||    ||||||| | |||||||||||||||||||  ||||||||||| | |    
T  48903255 tgtgatttatgggtatttggagaatttcttagcctatgggctttggattac---gataataaatttgaaatatgggtgatgaaagaatacaaagtgcatt 48903351  T
Q  269 cgtcttggac 278  Q
     |||||||||    
T  48903352 tgtcttggac 48903361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 7878045 - 7878087
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatg 213  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  7878045 tggtttgtgggtatttggagaatttctcagtctatgggctatg 7878087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 7878738 - 7878825
Alignment:
Q  227 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctga 314  Q
    |||||||||||||||||||||||||  ||||||||||| | || |||||||  || |||| ||||||| | ||||||| |||| ||||    
T  7878738 atacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctttcggttgatgtcattcctga 7878825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 48899037 - 48899147
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||||||||||||| ||||| || ||| ||||| ||||||||    |||||  | || |||||||||||||||||||||||||  |||| ||||| || |    
T  48899037 tgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatataaagtaaaat 48899136  T
Q  269 cgtcttggaca 279  Q
    | |||||||||    
T  48899137 cctcttggaca 48899147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 48735287 - 48735194
Alignment:
Q  39 tattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaactttttgatatgcatttgcca 132  Q
    |||||||||||||||||||  | |||||||||  ||| |||||||   || ||||||||||| | ||||| |||||||| ||||| ||||||||    
T  48735287 tattcattggttggcttatcatcatgatttacgtaagggtgttattgctgtctttgatttaatgtaaaggaaacttttttatatggatttgcca 48735194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 291
Target Start/End: Complemental strand, 37826752 - 37826632
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||    | || || ||||| || || || ||||||||||  |||||||| || | |||    
T  37826752 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcg 37826653  T
Q  271 tcttggacaaatactcatgtt 291  Q
    |||||||| || |||| ||||    
T  37826652 tcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 48864337 - 48864441
Alignment:
Q  174 tttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtct 273  Q
    ||||||||| ||||| || ||| ||||||||||| ||| || |    |||||| ||  ||||||||||||||||||||  ||||||||||| | ||||||    
T  48864337 tttgtgggtctttggagagtttatcagtctatggtctaggggtggatatgatactatcgttgaaatatgggtgatgaaagaatacaaagtgcattcgtct 48864436  T
Q  274 tggac 278  Q
    |||||    
T  48864437 tggac 48864441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 7908657 - 7908744
Alignment:
Q  227 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctga 314  Q
    ||||| |||||||||||||||||||  ||||||||||| | || |||||||  || |||| ||||||| | ||||||| |||| ||||    
T  7908657 atacacttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatgccattcctga 7908744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 45371780 - 45371729
Alignment:
Q  227 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggac 278  Q
    ||||||||||||||||||| |||||  ||||||||||| | |||||||||||    
T  45371780 atacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggac 45371729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 48853036 - 48853103
Alignment:
Q  227 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttctt 294  Q
    ||||||||||||||||||| |||||  |||||||||||   ||||||||||| || |||| |||||||    
T  48853036 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 48853103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 45371958 - 45371876
Alignment:
Q  34 ggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaactttt 116  Q
    ||||||||| |||||||| ||| | || ||||||||   | ||||||||| |||||||||||||||| |||| || |||||||    
T  45371958 ggggctatttattggttgtcttttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaactttt 45371876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 50669382 - 50669416
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtct 203  Q
    |||||||||||||||||||| ||||||||||||||    
T  50669382 tgtggtttgtgggtatttggagaatttctcagtct 50669416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 43596206 - 43596153
Alignment:
Q  152 actatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctat 205  Q
    ||||||||||| | || |||| | |||||||||||||||||||||| |||||||    
T  43596206 actatgatcctaaaaattgtgatatgtgggtatttggggaatttcttagtctat 43596153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 49038579 - 49038518
Alignment:
Q  232 gttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttct 293  Q
    ||||||||||||||||||||  ||||||||||  | ||||||||||| || |||| ||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 49043870 - 49043810
Alignment:
Q  231 agttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgtt 291  Q
    |||||||||||||||||||||  ||||||||||| | ||||| ||||| || |||| ||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 179364 - 179450
Alignment:
Q  178 tgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtg 264  Q
    |||||||||||  ||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||  |||||||||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtg 179450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 9120067 - 9120168
Alignment:
Q  176 tgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttg 275  Q
    ||||||||||||| |||||||||||| ||||||||||||||| |  | || |||||||||||||||||||||||||  ||||||||||| | || |||||    
T  9120067 tgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttg 9120166  T
Q  276 ga 277  Q
    ||    
T  9120167 ga 9120168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 29688485 - 29688543
Alignment:
Q  228 tacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactc 286  Q
    |||||||||||||||||||||||| |||||||| ||| | |||||||||||||| ||||    
T  29688485 tacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactc 29688543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 29712196 - 29712083
Alignment:
Q  178 tgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttgga 277  Q
    ||||||||| | | || |||||||||||||| |||||   || || ||  |||||||||||||||||||||| | |||||||| ||||  || |||||||    
T  29712196 tgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttgga 29712097  T
Q  278 caaatactcatgtt 291  Q
    | || |||| ||||    
T  29712096 ctaagactcttgtt 29712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 47451664 - 47451539
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||||||||||||||||||| |||||||| |||||| ||| | |||||| | || || ||| |||||||||||||||||||||  |||||||||| || |    
T  47451664 tgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaatt 47451565  T
Q  269 cgtcttggacaaatactcatgttctt 294  Q
    ||||||||  ||| |||| |||||||    
T  47451564 cgtcttgggaaaagactcttgttctt 47451539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 11024261 - 11024216
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatgg 214  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  11024261 tgtgatttgtggatatttggagaatttctcagtctatgggctatgg 11024216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 11015249 - 11015148
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||| ||||||| ||||||| |||||||| ||||||||||||||||      | |||   ||||||||||||||||| |||||  ||||||||||| | |    
T  11015249 tgtgatttgtggatatttggagaatttctaagtctatgggctatgg------aggatggaacagttgaaatatgggttatgaaagaatacaaagtgcatt 11015156  T
Q  269 cgtcttgg 276  Q
    ||||||||    
T  11015155 cgtcttgg 11015148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 11005686 - 11005583
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||| ||||||| ||||||| |||||||| ||||||||||||||||        ||| | ||| ||||||||||||| |||||  ||||||||||| | |    
T  11005686 tgtgatttgtggatatttggagaatttcttagtctatgggctatgg------gggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcatt 11005593  T
Q  269 cgtcttggac 278  Q
    ||||||||||    
T  11005592 cgtcttggac 11005583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 15349180 - 15349306
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||||||||||||| ||||| |||||| | ||||| ||| ||| |||||||  | || |||   |||||||||||||||||||  |||||||||||||||    
T  15349180 tgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaact 15349279  T
Q  269 cgtcttggacaaatactcatgttctta 295  Q
    | ||||||||||| | || ||||||||    
T  15349280 cttcttggacaaagattcttgttctta 15349306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 4962281 - 4962191
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaa 261  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||||    ||  || |||||||||||||||||||||  ||||||||    
T  4962281 tggtttgtgggtatttggagaatttctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaa 4962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 12195623 - 12195713
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaa 261  Q
    ||||||||||||||||||  |||||||||||||||||  |||| ||| | || ||   |||||||||||||||| ||||||  ||||||||    
T  12195623 tggtttgtgggtatttggaaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaa 12195713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 12440051 - 12440141
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaa 261  Q
    ||||||||||||||||||  |||||||||||||||||  |||| ||| | || ||   |||||||||||||||| ||||||  ||||||||    
T  12440051 tggtttgtgggtatttggaaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaa 12440141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 12200641 - 12200748
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||||||| |||||||| |||||||||  |||| ||| | || || | ||  |||||||||||| |||||| | ||||||| ||   |||    
T  12200641 tggtttgtgggtatttggagaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcg 12200740  T
Q  271 tcttggac 278  Q
    ||||||||    
T  12200741 tcttggac 12200748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 12445069 - 12445176
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||||||| |||||||| |||||||||  |||| ||| | || || | ||  |||||||||||| |||||| | ||||||| ||   |||    
T  12445069 tggtttgtgggtatttggagaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcg 12445168  T
Q  271 tcttggac 278  Q
    ||||||||    
T  12445169 tcttggac 12445176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 21015998 - 21016062
Alignment:
Q  34 ggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgattt 98  Q
    |||||||||||||||||||||| | || ||||||||  || ||  |||||| |||||||||||||    
T  21015998 ggggctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 21016062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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