View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6304_high_13 (Length: 315)

Name: NF6304_high_13
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6304_high_13
NF6304_high_13
[»] chr5 (16 HSPs)
chr5 (11-139)||(21063602-21063734)
chr5 (2-139)||(28299082-28299223)
chr5 (11-139)||(39057304-39057440)
chr5 (202-291)||(12676140-12676229)
chr5 (2-140)||(12676291-12676445)
chr5 (1-110)||(40249234-40249347)
chr5 (2-78)||(28466560-28466636)
chr5 (11-112)||(33365390-33365494)
chr5 (233-287)||(8235436-8235490)
chr5 (256-287)||(34445339-34445370)
chr5 (235-285)||(11607319-11607369)
chr5 (105-139)||(35261719-35261753)
chr5 (109-139)||(40249190-40249220)
chr5 (233-286)||(17096475-17096528)
chr5 (252-285)||(18551010-18551043)
chr5 (259-287)||(1249188-1249216)
[»] chr3 (10 HSPs)
chr3 (11-139)||(55229674-55229810)
chr3 (2-85)||(35161866-35161949)
chr3 (89-139)||(14779302-14779352)
chr3 (12-85)||(14779188-14779261)
chr3 (2-110)||(53220545-53220663)
chr3 (104-139)||(35161794-35161829)
chr3 (233-287)||(1755918-1755972)
chr3 (245-287)||(37448513-37448555)
chr3 (235-287)||(21730134-21730186)
chr3 (235-287)||(52532714-52532766)
[»] chr8 (7 HSPs)
chr8 (11-139)||(12822389-12822522)
chr8 (2-121)||(27779220-27779343)
chr8 (11-68)||(34985505-34985562)
chr8 (233-287)||(8688367-8688421)
chr8 (233-287)||(10396827-10396881)
chr8 (233-287)||(30857284-30857338)
chr8 (235-287)||(10632381-10632433)
[»] chr6 (6 HSPs)
chr6 (2-110)||(6061853-6061965)
chr6 (4-85)||(19231127-19231207)
chr6 (233-280)||(16433955-16434002)
chr6 (104-139)||(19231249-19231284)
chr6 (109-139)||(6061979-6062009)
chr6 (244-276)||(7199180-7199212)
[»] chr4 (18 HSPs)
chr4 (2-85)||(38645909-38645992)
chr4 (11-110)||(1601786-1601889)
chr4 (11-85)||(25727539-25727613)
chr4 (42-112)||(2183069-2183145)
chr4 (104-139)||(2183151-2183186)
chr4 (233-287)||(45828474-45828528)
chr4 (104-139)||(1601897-1601932)
chr4 (244-291)||(27952533-27952580)
chr4 (233-287)||(20114118-20114172)
chr4 (109-139)||(25727466-25727496)
chr4 (109-139)||(38645687-38645717)
chr4 (253-287)||(45848289-45848323)
chr4 (233-287)||(53658423-53658477)
chr4 (245-286)||(25129757-25129798)
chr4 (259-287)||(20291863-20291891)
chr4 (241-289)||(26165965-26166013)
chr4 (259-287)||(39114959-39114987)
chr4 (235-287)||(40025983-40026035)
[»] chr7 (10 HSPs)
chr7 (2-112)||(28711691-28711806)
chr7 (11-112)||(20954211-20954315)
chr7 (2-69)||(47953405-47953472)
chr7 (104-138)||(28711812-28711846)
chr7 (235-287)||(40364641-40364693)
chr7 (233-287)||(39854751-39854805)
chr7 (238-287)||(3230765-3230814)
chr7 (255-287)||(35985336-35985368)
chr7 (255-287)||(36006744-36006776)
chr7 (252-284)||(42927019-42927051)
[»] chr1 (14 HSPs)
chr1 (2-110)||(12026040-12026154)
chr1 (11-85)||(40119247-40119321)
chr1 (2-85)||(9955654-9955737)
chr1 (19-110)||(11022236-11022331)
chr1 (2-67)||(33051856-33051921)
chr1 (39-110)||(14500240-14500316)
chr1 (104-139)||(12025997-12026032)
chr1 (104-139)||(33051922-33051957)
chr1 (104-139)||(40119358-40119393)
chr1 (233-287)||(4604893-4604947)
chr1 (106-139)||(9955812-9955845)
chr1 (18-55)||(14500420-14500457)
chr1 (235-287)||(5950900-5950952)
chr1 (244-288)||(15444339-15444383)
[»] scaffold0020 (1 HSPs)
scaffold0020 (12-85)||(133080-133153)
[»] scaffold0440 (1 HSPs)
scaffold0440 (11-107)||(2553-2653)
[»] chr2 (8 HSPs)
chr2 (20-110)||(29160323-29160417)
chr2 (20-110)||(27082459-27082555)
chr2 (84-139)||(45084871-45084926)
chr2 (104-139)||(29160425-29160460)
chr2 (233-291)||(6458594-6458652)
chr2 (233-287)||(14803068-14803122)
chr2 (237-281)||(12517451-12517495)
chr2 (202-234)||(27016424-27016456)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 21063602 - 21063734
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccacacatctatca 106  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||    ||| ||||| |||| || |||||    
T  21063602 ataatattttcttttgttatgtgggtccaaatcaaacacttattatttgacaaaaataaagagtaaatgaacaagttaggtcaaactcacaaatttatca 21063701  T
Q  107 acaaaacaaattaaaatcaaaataatgcttatt 139  Q
    |||||||||||||||||||||||||||||||||    
T  21063702 acaaaacaaattaaaatcaaaataatgcttatt 21063734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 28299082 - 28299223
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccaca 97  Q
    |||||| | ||||||||||||||| ||| ||||| |||||| ||||||||||||| ||||||||||||||||||||| ||||    ||||||||||||||    
T  28299082 ggatgtagtataatattttcttttattacgtagggctaaattaaacacttattatttgacaaaaataaagagtaaattgacaagttaggccaaacccaca 28299181  T
Q  98 catctatcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
     |||||||||||| ||||||||||||||||||||| ||||||    
T  28299182 aatctatcaacaagacaaattaaaatcaaaataatccttatt 28299223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 39057440 - 39057304
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccacacatctatca 106  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||    ||| ||||||||| |||||||||    
T  39057440 ataatattttcttttgctatgtaggtctaaatcaaacaattattatttgacaaaaataaagagtaaatagacaaattaggtcaaacccacgcatctatca 39057341  T
Q  107 ac----aaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||    |||||||||||||||||||||||||||||||    
T  39057340 acaacaaaaacaaattaaaatcaaaataatgcttatt 39057304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 12676229 - 12676140
Alignment:
Q  202 gagccgagtctccaattttttggaacggccctgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaattaa 291  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12676229 gagccgagtctccaattttttggaacgaccctgtatttgatttatattacagatcaaatacattagttattcaatgaatctaaaaattaa 12676140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 12676445 - 12676291
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag----gccaaacccaca 97  Q
    |||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  12676445 ggatgtagaataatgttttcttttgttatgtgggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaagtaaagccaaacccaca 12676346  T
Q  98 catc------------tatcaacaaaacaaattaaaatcaaaataatgcttattc 140  Q
    ||||             ||||||||||||||||||||||||| ||||||||||||    
T  12676345 catcaacaaaaaaaaaaatcaacaaaacaaattaaaatcaaagtaatgcttattc 12676291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40249347 - 40249234
Alignment:
Q  1 cggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccac 96  Q
    ||||||| | |||||||||| |||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||    ||| ||||||||     
T  40249347 cggatgtaggataatattttattttgttatgttagtctaaatcaaactcttattatttgacaaaaataaagagtaaatggacaagttaggtcaaacccat 40249248  T
Q  97 acatctatcaacaa 110  Q
    ||||||||||||||    
T  40249247 acatctatcaacaa 40249234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 28466636 - 28466560
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaat 78  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  28466636 ggatgtaggataatattttcttttgttatgtaagtctaaatcaaacacttattatttgacaaaagtaaagagtaaat 28466560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 33365494 - 33365390
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccacacatctatca 106  Q
    ||||||||||||||| ||||||||||| ||||||||||||| || | ||||||||||||||||||||| || |    ||||||||||||||||| |||||    
T  33365494 ataatattttcttttattatgtaggtccaaatcaaacacttgtt-tttgacaaaaataaagagtaaattgataagttaggccaaacccacacatttatca 33365396  T
Q  107 acaaaa 112  Q
    ||||||    
T  33365395 acaaaa 33365390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 8235436 - 8235490
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||| ||||||||| ||| |||||| |||| ||||||||||||||||||||    
T  8235436 tgtatttgatttatattatagaccaaatatattaattattcaataaatctaaaaa 8235490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 287
Target Start/End: Original strand, 34445339 - 34445370
Alignment:
Q  256 caaatacattagttattcaataaatctaaaaa 287  Q
    ||||||||||||||||||||||||||||||||    
T  34445339 caaatacattagttattcaataaatctaaaaa 34445370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 11607369 - 11607319
Alignment:
Q  235 tatttggtttatattacagatcaaatacattagttattcaataaatctaaa 285  Q
    ||||||||||||| |||| | ||||||||||||||||| ||||||| ||||    
T  11607369 tatttggtttataatacaaaccaaatacattagttattaaataaatttaaa 11607319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 35261753 - 35261719
Alignment:
Q  105 caacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||||||||||||||||||||||||||||| |||||    
T  35261753 caacaaaacaaattaaaatcaaaataatgtttatt 35261719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 40249220 - 40249190
Alignment:
Q  109 aaaacaaattaaaatcaaaataatgcttatt 139  Q
    |||||||||||||||||||||||||||||||    
T  40249220 aaaacaaattaaaatcaaaataatgcttatt 40249190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 17096528 - 17096475
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaa 286  Q
    ||||| |||||||||||| ||||||||||||||| | ||| ||| |||||||||    
T  17096528 tgtatgtggtttatattatagatcaaatacattattgattgaatgaatctaaaa 17096475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 18551043 - 18551010
Alignment:
Q  252 agatcaaatacattagttattcaataaatctaaa 285  Q
    ||||||||||||||||||||||||| ||||||||    
T  18551043 agatcaaatacattagttattcaatgaatctaaa 18551010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 1249188 - 1249216
Alignment:
Q  259 atacattagttattcaataaatctaaaaa 287  Q
    |||||||||||||||||||||||||||||    
T  1249188 atacattagttattcaataaatctaaaaa 1249216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 55229810 - 55229674
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccacacatctatca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||    ||||||||  |||||||||||||    
T  55229810 ataatattttcttttgttatgtaggtctaaatcaaacacttattatttgataaaagtaaagagtaaatggacaagttaggccaaaggcacacatctatca 55229711  T
Q  107 ac----aaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||    |||||||||||||||| ||||||||||||||    
T  55229710 acaacaaaaacaaattaaaatctaaataatgcttatt 55229674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 35161949 - 35161866
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag 85  Q
    |||||| | ||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||    
T  35161949 ggatgtaggataatatttccttttgttatgtaggtccaaatcaaacacttattgtttgacaaaaataaagagtaaattgacaag 35161866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 14779302 - 14779352
Alignment:
Q  89 aaacccacacatctatcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14779302 aaacccacacatctatcaacaaaacaaattaaaatcaaaataatgcttatt 14779352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 14779188 - 14779261
Alignment:
Q  12 taatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag 85  Q
    ||||||||||||||||||| |||||  |||||||||||||||||| ||| |||||||||||||| |||||||||    
T  14779188 taatattttcttttgttatttaggttcaaatcaaacacttattatttgataaaaataaagagtagatggacaag 14779261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 53220663 - 53220545
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacac-------ttattatctgacaaaaataaagagtaaatggaca----aggccaa 90  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||||       ||||||| || ||||| |||||||||||||||||    ||| |||    
T  53220663 ggatgtaggataatattttcttttgttatgtaggtct-aatcaaacacttattaattattatttgtcaaaagtaaagagtaaatggacaagttaggtcaa 53220565  T
Q  91 acccacacatctatcaacaa 110  Q
    ||||||||||||||||||||    
T  53220564 acccacacatctatcaacaa 53220545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 35161829 - 35161794
Alignment:
Q  104 tcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||||||||||||||||||||||||||||||||||||    
T  35161829 tcaacaaaacaaattaaaatcaaaataatgcttatt 35161794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 1755918 - 1755972
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    ||||||||||  ||| |||||| || |||||||||||||| ||||||||||||||    
T  1755918 tgtatttggtccataatacagaccagatacattagttattgaataaatctaaaaa 1755972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 37448513 - 37448555
Alignment:
Q  245 atattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||| |||||||||||||  |||||||||||||||||||    
T  37448513 atattacatatcaaatacattaaatattcaataaatctaaaaa 37448555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 21730134 - 21730186
Alignment:
Q  235 tatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    ||||||||||||  |||||| ||||||||||| ||| | ||||||||||||||    
T  21730134 tatttggtttatgatacagaccaaatacattaattaatgaataaatctaaaaa 21730186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 52532766 - 52532714
Alignment:
Q  235 tatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||| | ||||| ||||||||||||||||||||| ||| ||| ||||||    
T  52532766 tatttggtctttattatagatcaaatacattagttattgaatgaatataaaaa 52532714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 12822389 - 12822522
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag----gccaaacc-cacacatctatc 105  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| | ||||| ||||||    |||||| | ||||||||||||    
T  12822389 ataatattttcttttgttatgtaggttcaaatcaaacacttattatttgacaaaaataaaaaataaattgacaagttaggccaaatctcacacatctatc 12822488  T
Q  106 aacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    |||||||||||||||||||||||||||| |||||    
T  12822489 aacaaaacaaattaaaatcaaaataatgtttatt 12822522  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 27779343 - 27779220
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccaca 97  Q
    |||||| | ||||||||||||||||||||||| ||  |||||||||| ||||||| ||||||||||||| |||||  |||||    |||||||||| |||    
T  27779343 ggatgtaggataatattttcttttgttatgtatgttcaaatcaaacatttattatttgacaaaaataaaaagtaacgggacaagttaggccaaacctaca 27779244  T
Q  98 catctatcaacaaaacaaattaaa 121  Q
    ||||||||||||||| ||||||||    
T  27779243 catctatcaacaaaaaaaattaaa 27779220  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 34985562 - 34985505
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaata 68  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  34985562 ataatgttttcttttgttatgttagtctaaatcaaacacttattatttgacaaaaata 34985505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 8688367 - 8688421
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||||  ||||||| ||||||||||||| | ||||||||||||||||||||    
T  8688367 tgtatttggcctatattatagatcaaatacatcacttattcaataaatctaaaaa 8688421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 10396881 - 10396827
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    ||||||||||||| | || ||| || |||||||||||||||||| ||||||||||    
T  10396881 tgtatttggtttagaatatagaccatatacattagttattcaattaatctaaaaa 10396827  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 30857284 - 30857338
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||||| ||||||| | |||||||| |||||  ||||||||||||||||||    
T  30857284 tgtatttggtatatattatacatcaaatatattaggcattcaataaatctaaaaa 30857338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 10632433 - 10632381
Alignment:
Q  235 tatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    ||||| || ||||||| ||||||||||| | ||||||||||||||| ||||||    
T  10632433 tatttagtatatattatagatcaaatacttaagttattcaataaatataaaaa 10632381  T

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Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 6061853 - 6061965
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccaca 97  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    ||| ||||||||||    
T  6061853 ggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatggacaagttaggtcaaacccaca 6061952  T
Q  98 catctatcaacaa 110  Q
    |||||||||||||    
T  6061953 catctatcaacaa 6061965  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 19231127 - 19231207
Alignment:
Q  4 atgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag 85  Q
    |||| |||||||||||||| ||||||||||| || |||||||||| ||||||| |||| |||||||||| ||||||||||||    
T  19231127 atgtagaataatattttctgttgttatgtagctcaaaatcaaacatttattatttgac-aaaataaagaataaatggacaag 19231207  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 16433955 - 16434002
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaat 280  Q
    |||||||| | ||||||| |||||||||||||||| ||||||||||||    
T  16433955 tgtatttgatatatattatagatcaaatacattagatattcaataaat 16434002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 19231249 - 19231284
Alignment:
Q  104 tcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    |||||||||||||||||||||||||||||| |||||    
T  19231249 tcaacaaaacaaattaaaatcaaaataatgtttatt 19231284  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 6061979 - 6062009
Alignment:
Q  109 aaaacaaattaaaatcaaaataatgcttatt 139  Q
    |||||||||||||||||||||||||||||||    
T  6061979 aaaacaaattaaaatcaaaataatgcttatt 6062009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 7199180 - 7199212
Alignment:
Q  244 tatattacagatcaaatacattagttattcaat 276  Q
    ||||||||| |||||||||||||||||||||||    
T  7199180 tatattacatatcaaatacattagttattcaat 7199212  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 38645992 - 38645909
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag 85  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  38645992 ggatgtaggataatattttcttttgttatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatggacaag 38645909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 1601786 - 1601889
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccacacatctatca 106  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |||    |||||||||||||||||||||||    
T  1601786 ataatattttctcttgttatgtaggtctaaatcaaacacttattattttacaaaagtaaagagtaaatgaacaagttaggccaaacccacacatctatca 1601885  T
Q  107 acaa 110  Q
    ||||    
T  1601886 acaa 1601889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 25727613 - 25727539
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag 85  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  25727613 ataatattttcttttgttatgtaggtctaaatcaaatacttattatttgacaaaagtaaagagtaaatggacaag 25727539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 2183069 - 2183145
Alignment:
Q  42 tcaaacacttattatctgacaaaaa-taaagagtaaatggacaag----gccaaacc-cacacatctatcaacaaaa 112  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    |||||| | |||||||||||||||||||    
T  2183069 tcaaacacttattatttgacaaaaaataaagagtaaatggacaagttaggccaaatctcacacatctatcaacaaaa 2183145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 2183151 - 2183186
Alignment:
Q  104 tcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||||||||||||||||||||||||||||||||||||    
T  2183151 tcaacaaaacaaattaaaatcaaaataatgcttatt 2183186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 45828474 - 45828528
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||||||||||||| ||| ||||||||||| ||| ||||| ||||||||||    
T  45828474 tgtatttggtttatattatagaccaaatacattaattactcaatgaatctaaaaa 45828528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 1601897 - 1601932
Alignment:
Q  104 tcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||||||||||||||||||||||||||||| ||||||    
T  1601897 tcaacaaaacaaattaaaatcaaaataatacttatt 1601932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 27952533 - 27952580
Alignment:
Q  244 tatattacagatcaaatacattagttattcaataaatctaaaaattaa 291  Q
    ||||||| ||| |||||||| ||||||||||| |||||||||||||||    
T  27952533 tatattatagaccaaatacaatagttattcaacaaatctaaaaattaa 27952580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 20114118 - 20114172
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    ||||||||||||| | || ||| || |||||||||||||||||| ||||||||||    
T  20114118 tgtatttggtttagaatatagaccatatacattagttattcaattaatctaaaaa 20114172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 25727496 - 25727466
Alignment:
Q  109 aaaacaaattaaaatcaaaataatgcttatt 139  Q
    |||||||||||||||||||||||||||||||    
T  25727496 aaaacaaattaaaatcaaaataatgcttatt 25727466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 38645717 - 38645687
Alignment:
Q  109 aaaacaaattaaaatcaaaataatgcttatt 139  Q
    |||||||||||||||||||||||||||||||    
T  38645717 aaaacaaattaaaatcaaaataatgcttatt 38645687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 45848323 - 45848289
Alignment:
Q  253 gatcaaatacattagttattcaataaatctaaaaa 287  Q
    ||||| |||||||||||||||||||||||||||||    
T  45848323 gatcagatacattagttattcaataaatctaaaaa 45848289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 53658423 - 53658477
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||||| ||||||  |||  ||||||||||||||| |||||||||||||||    
T  53658423 tgtatttggtctatattctagacaaaatacattagttatacaataaatctaaaaa 53658477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 25129757 - 25129798
Alignment:
Q  245 atattacagatcaaatacattagttattcaataaatctaaaa 286  Q
    |||||| |||||||||| ||||| ||||||||||||||||||    
T  25129757 atattatagatcaaatatattagatattcaataaatctaaaa 25129798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 20291863 - 20291891
Alignment:
Q  259 atacattagttattcaataaatctaaaaa 287  Q
    |||||||||||||||||||||||||||||    
T  20291863 atacattagttattcaataaatctaaaaa 20291891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 26165965 - 26166013
Alignment:
Q  241 gtttatattacagatcaaatacattagttattcaataaatctaaaaatt 289  Q
    |||||||||| ||| ||||||||||||||||||||| || |||| ||||    
T  26165965 gtttatattatagaccaaatacattagttattcaatgaacctaataatt 26166013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 39114987 - 39114959
Alignment:
Q  259 atacattagttattcaataaatctaaaaa 287  Q
    |||||||||||||||||||||||||||||    
T  39114987 atacattagttattcaataaatctaaaaa 39114959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 40026035 - 40025983
Alignment:
Q  235 tatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||| ||||||||||| | | |||| ||||||||||||| |||||||||||    
T  40026035 tatttgatttatattacaaaccgaatatattagttattcaaaaaatctaaaaa 40025983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 28711691 - 28711806
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttatta-tctgacaaaaataaagagtaaatggaca----aggccaaacccac 96  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||||||||||| |    ||||||||| ||     
T  28711691 ggatgtagaataatattttcttttgttatataggtccaaatcaaacacttattattttgataaaaataaagagtaaatggataagttaggccaaactcat 28711790  T
Q  97 acatctatcaacaaaa 112  Q
    ||||||||||||||||    
T  28711791 acatctatcaacaaaa 28711806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 20954211 - 20954315
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatgga----caaggccaaacccacacatctatca 106  Q
    |||||||||||||||||||||||| || ||||||||||||||| || ||||||||||||| | ||||||||     |||||||||||||||||||| |||    
T  20954211 ataatattttcttttgttatgtag-tccaaatcaaacacttataatttgacaaaaataaataataaatggataagtaaggccaaacccacacatctgtca 20954309  T
Q  107 acaaaa 112  Q
    ||||||    
T  20954310 acaaaa 20954315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 47953472 - 47953405
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataa 69  Q
    |||||| | ||||||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||    
T  47953472 ggatgtagtataatattttcttttgttacgtagggttaaatcaaacacttattatttgacaaaaataa 47953405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 28711812 - 28711846
Alignment:
Q  104 tcaacaaaacaaattaaaatcaaaataatgcttat 138  Q
    |||||||||||||||||||||||||||||||||||    
T  28711812 tcaacaaaacaaattaaaatcaaaataatgcttat 28711846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 40364641 - 40364693
Alignment:
Q  235 tatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||||||||||| ||||||||||||| | ||||||||| || |||||||    
T  40364641 tatttggtttatattatagatcaaatacatcaattattcaattaacctaaaaa 40364693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 39854805 - 39854751
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||||| | || ||||||  |||||||||||||||| ||||||||||||||    
T  39854805 tgtatttggtctgtaatacagactaaatacattagttattaaataaatctaaaaa 39854751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 3230814 - 3230765
Alignment:
Q  238 ttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    ||||| ||||||| | |||| |||| ||||||||||||||||||||||||    
T  3230814 ttggtctatattataaatcatatactttagttattcaataaatctaaaaa 3230765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 35985336 - 35985368
Alignment:
Q  255 tcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||||||||||||||||| ||||||||||    
T  35985336 tcaaatacattagttattcaattaatctaaaaa 35985368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 36006744 - 36006776
Alignment:
Q  255 tcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||||||||||||||||| ||||||||||    
T  36006744 tcaaatacattagttattcaattaatctaaaaa 36006776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 42927051 - 42927019
Alignment:
Q  252 agatcaaatacattagttattcaataaatctaa 284  Q
    ||||||||||||||||||||||||| |||||||    
T  42927051 agatcaaatacattagttattcaatgaatctaa 42927019  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 12026154 - 12026040
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacc--ca 95  Q
    |||||| | |||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||    ||||||||||  ||    
T  12026154 ggatgtaggataatattttcttttgttatttaggtctaaattaaacacttactatttgacaaaaataaagagtaaattgacaagttaggccaaacccaca 12026055  T
Q  96 cacatctatcaacaa 110  Q
    |||||||||||||||    
T  12026054 cacatctatcaacaa 12026040  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 40119247 - 40119321
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag 85  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||| ||||||    
T  40119247 ataatattttcttttgttatgtaggtttaaattaaacacttgttatttgacaaaaataaagagtaaattgacaag 40119321  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 9955654 - 9955737
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag 85  Q
    |||||| | |||||||||| ||||||||||||| || |||||||||||||||||| | ||||||||||||||||||| ||||||    
T  9955654 ggatgtaggataatattttattttgttatgtagatccaaatcaaacacttattattttacaaaaataaagagtaaattgacaag 9955737  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 11022331 - 11022236
Alignment:
Q  19 ttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaagg----ccaaacccacacatctatcaacaa 110  Q
    ||||||| |||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||     |||||||||||||| |||||||||    
T  11022331 ttcttttattatgtaggtctaaatcaaacactcattatttggtaaaaataaagagtaaatggacaagttagaccaaacccacacatttatcaacaa 11022236  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 33051856 - 33051921
Alignment:
Q  2 ggatgtcgaataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaat 67  Q
    |||||| | |||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||    
T  33051856 ggatgtaggataatattttcttttgttttgtaggtctaaattaaacacttactatttgacaaaaat 33051921  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 14500316 - 14500240
Alignment:
Q  39 aaatcaaacacttattatctgacaaaaat-aaagagtaaatggaca----aggccaaacccacacatctatcaacaa 110  Q
    |||||||||||||||||| |||||||||| |||||||||||||| |    ||||||||| |||||||||||||||||    
T  14500316 aaatcaaacacttattatttgacaaaaataaaagagtaaatggataagttaggccaaactcacacatctatcaacaa 14500240  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 12026032 - 12025997
Alignment:
Q  104 tcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||||||||||||||||||||||||||||||||||||    
T  12026032 tcaacaaaacaaattaaaatcaaaataatgcttatt 12025997  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 33051922 - 33051957
Alignment:
Q  104 tcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||||||||||||||||||||||||||||||||||||    
T  33051922 tcaacaaaacaaattaaaatcaaaataatgcttatt 33051957  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 40119358 - 40119393
Alignment:
Q  104 tcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||||||||||||||||||||||||||||| ||||||    
T  40119358 tcaacaaaacaaattaaaatcaaaataatacttatt 40119393  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 4604893 - 4604947
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    ||||||||||||||| || | | |||||||||||| ||||||||||| |||||||    
T  4604893 tgtatttggtttataatatataccaaatacattaggtattcaataaacctaaaaa 4604947  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 9955812 - 9955845
Alignment:
Q  106 aacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    |||||||||||| |||||||||||||||||||||    
T  9955812 aacaaaacaaataaaaatcaaaataatgcttatt 9955845  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 14500457 - 14500420
Alignment:
Q  18 tttcttttgttatgtaggtctaaatcaaacacttatta 55  Q
    |||||||||||||||||||  |||||||||||||||||    
T  14500457 tttcttttgttatgtaggttcaaatcaaacacttatta 14500420  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 5950900 - 5950952
Alignment:
Q  235 tatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||| ||||| | | ||||||||||||| ||||||||||||| ||||||    
T  5950900 tatttggtatatatcataaatcaaatacattaattattcaataaatttaaaaa 5950952  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 15444339 - 15444383
Alignment:
Q  244 tatattacagatcaaatacattagttattcaataaatctaaaaat 288  Q
    ||||||| |||||||||| || |||||||| ||||||||||||||    
T  15444339 tatattatagatcaaatatatcagttattccataaatctaaaaat 15444383  T

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Target: scaffold0020 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 133080 - 133153
Alignment:
Q  12 taatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag 85  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||||||||||||||||||||||    
T  133080 taatattttcttttgttatgtaggtctaaattaaacacttcctatttgacaaaaataaagagtaaatggacaag 133153  T

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Target: scaffold0440 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 2653 - 2553
Alignment:
Q  11 ataatattttcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggacaag----gccaaacccacacatctatca 106  Q
    ||||||||||||||||||||| | ||  |||||||||| ||||||| |||||||||||||||||||||||| |||    |||||||||||||||||||||    
T  2653 ataatattttcttttgttatgcaagttcaaatcaaacatttattatttgacaaaaataaagagtaaatggataagttaagccaaacccacacatctatca 2554  T
Q  107 a 107  Q
    |    
T  2553 a 2553  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 29160323 - 29160417
Alignment:
Q  20 tcttttgttatgtaggtctaaatcaaacacttattatctgacaaaaataaagagtaaatggaca----aggccaaacccacacatctatcaacaa 110  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||||| ||||||||||    ||| ||||| |||||||||||||||||    
T  29160323 tcttttgttatgtaagtctaaatcaaacacttattatttaacaaaaataaagaataaatggacaagttaggtcaaacacacacatctatcaacaa 29160417  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 27082459 - 27082555
Alignment:
Q  20 tcttttgttatgtaggtctaaatcaaacacttattatctgacaaaa--ataaagagtaaatggaca----aggccaaacccacacatctatcaacaa 110  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||  | |||||||||||| |||    |||||||||||||||||||||||||||    
T  27082459 tcttttgttatgtagatctaaatcaaacacttattatttgacaaaagtaaaaagagtaaatgaacaagttaggccaaacccacacatctatcaacaa 27082555  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 45084871 - 45084926
Alignment:
Q  84 aggccaaacccacacatctatcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  45084871 aggccaaacccacacatctatcaacaaaaaaaattaaaatcaaaataatccttatt 45084926  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 29160425 - 29160460
Alignment:
Q  104 tcaacaaaacaaattaaaatcaaaataatgcttatt 139  Q
    ||||||||||||||||||||||||||||||||||||    
T  29160425 tcaacaaaacaaattaaaatcaaaataatgcttatt 29160460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 6458594 - 6458652
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaattaa 291  Q
    |||||||| | ||||||| ||||||||||||  | ||| ||||||||||||||||||||    
T  6458594 tgtatttgatctatattatagatcaaatacaaaaattaatcaataaatctaaaaattaa 6458652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 14803122 - 14803068
Alignment:
Q  233 tgtatttggtttatattacagatcaaatacattagttattcaataaatctaaaaa 287  Q
    |||||||| | ||||||| ||||||||||||| | |||||| |||||||||||||    
T  14803122 tgtatttgatctatattatagatcaaatacatcaattattctataaatctaaaaa 14803068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 12517495 - 12517451
Alignment:
Q  237 tttggtttatattacagatcaaatacattagttattcaataaatc 281  Q
    |||||| |||||||||| |||||| ||||||||||| ||||||||    
T  12517495 tttggtctatattacaggtcaaatgcattagttattaaataaatc 12517451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 27016424 - 27016456
Alignment:
Q  202 gagccgagtctccaattttttggaacggccctg 234  Q
    |||||||| ||||||||||||||||||||||||    
T  27016424 gagccgagcctccaattttttggaacggccctg 27016456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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