View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_high_14 (Length: 307)
Name: NF6304_high_14
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 45535980 - 45535701
Alignment:
| Q |
13 |
aatattgtgagagaggtgactgacatggatgttgatgctgatgtttcattctaatgcaaatatagtactcttaccttaatgacgaagtctagggtgaaat |
112 |
Q |
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| T |
45535980 |
aatattgtgagagaggtgactgacatggatgttgatgctgatgtttcattctaatgcaaatatagtactcttaccttaatgacgaagtctagggtgaaac |
45535881 |
T |
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| Q |
113 |
acctcgccatgtctttcaggtgcataagattacacagtgtaatagtacagattataaatgattgatagtgatcctaattttattatctacaagcaacctc |
212 |
Q |
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| T |
45535880 |
acctcgccatgtctttcaggtgcataagattacacagtgtaatagtacagattataaatgattgatagtgatcctaattttattatctacaagcaacctc |
45535781 |
T |
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| Q |
213 |
ttacttaactaaatcatttactttttgctgatataggagggatgaatcatccgaggattattgctatgtagtttcttttt |
292 |
Q |
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| T |
45535780 |
ttacttaactaaatcatttactttttgctgatatagtagggatgaatcatccgaggattattgctatgtagtttcttttt |
45535701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 45542861 - 45542810
Alignment:
| Q |
13 |
aatattgtgagagaggtgactgacatggatgttgatgctgatgtttcattct |
64 |
Q |
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| T |
45542861 |
aatattgtaagagaggtgactgacatggatgttgatgctggtgtttcattct |
45542810 |
T |
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