View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_high_20 (Length: 251)
Name: NF6304_high_20
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_high_20 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 104 - 251
Target Start/End: Original strand, 786962 - 787109
Alignment:
| Q |
104 |
actcaataaaaaattaattttgttatctaaatcaccctcaatggctaatatatttggtcattagaatttatataaaactaaaggagagggatagtataga |
203 |
Q |
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| T |
786962 |
actcaataaaaaattaattttgttatctaaatcaccctcaatggctaatatatttggtcactagaatttatataaaactaaaggagagggatagtataga |
787061 |
T |
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| Q |
204 |
gaagttagattttgcttatataatcattctatacaaaatgagggatta |
251 |
Q |
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| T |
787062 |
gaagttagattttgcttatataatcattctatacaaaatgagggatta |
787109 |
T |
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Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 786827 - 786922
Alignment:
| Q |
10 |
aagaaaatagagtcatcaacgtccaaattgttagaacaaaacccttgtcagattctaaatgtgaaatgaaatataagccaagattgattaaattac |
105 |
Q |
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| T |
786827 |
aagaaaatagagtcatcaacgtcaaaattgttagaacaaaacccttgtcagattctaaatgtgaaatgaaatataagccaagattgattaaattac |
786922 |
T |
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