View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_high_23 (Length: 243)
Name: NF6304_high_23
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40222867 - 40223093
Alignment:
| Q |
1 |
aaaacgtcttcatataacttcaatcctttcacaacattcacctgcaaattgcaatcagctgttattcagaagtactgcagtaataataacctgaatctta |
100 |
Q |
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| T |
40222867 |
aaaacgtcttcatataacttcaatcctttcacaacattcacctgcaaattgcaatcagctgttattcagaagtactgcagtaataataacctgaatctta |
40222966 |
T |
|
| Q |
101 |
atgcataaattaattgggacgaaataaatgtaatgtaatgtattttaaatttgtgacataaagaaagaacttgccatatgccccttcactgactcttttg |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222967 |
atgcataaattaattaggacgaaataaatgtaatgtaatgtattttaaatttgtgacataaagaaagaacttgccatatgccccttcactgactcttttg |
40223066 |
T |
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| Q |
201 |
ctgtaaaaccttttgtcaacttaaact |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
40223067 |
ctgtaaaaccttttgtcaacttaaact |
40223093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37509669 - 37509723
Alignment:
| Q |
1 |
aaaacgtcttcatataacttcaatcctttcacaacattcacctgcaaattgcaat |
55 |
Q |
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|||||||| ||||| ||| |||||||||||||| ||||||||||| ||||||||| |
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| T |
37509669 |
aaaacgtcctcatacaacctcaatcctttcacagcattcacctgctaattgcaat |
37509723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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