View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_high_3 (Length: 516)
Name: NF6304_high_3
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 40222697 - 40222192
Alignment:
| Q |
1 |
cgttatataatgaatcgaatatttcttaaactgctacttctcttgcatcctttgtaggtgaaacttttatattattcaacaaacagatgaaaggtaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222697 |
cgttatataatgaatcgaatatttcttaaactgctacttctcttgcatcctttgtaggtgaaacttttatattattcaacaaacagatgaaaggtaacaa |
40222598 |
T |
|
| Q |
101 |
gagagagctcattcagcttggtgttccaatatttggacagataaaggaggacacaaaaagtaagaagaatttattgaagaaattttgatttatcaagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222597 |
gagagagctcattcagcttggtgttccaatatttggacagataaaggaggacacaaaaagtaagaagaatttattgaagaaattttgatttatcaagtag |
40222498 |
T |
|
| Q |
201 |
ttttactttaccttaatataagtacaatctcattcttatgatctcaaatattgcataaatgatgattctaaactagagatatgctctgtaattctgnnnn |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222497 |
ttttactttaccttaatataagtacaatctcattcttatgatctcaaatattgcataaatgatgattctaaactagagatatgctctgtaattctgtttt |
40222398 |
T |
|
| Q |
301 |
nnnnnnnnnnnnnnnnnnnnncaggtaatatagagccaattccggcacttctgcagcgtgttattgatcactttattcaatggcatttacttccggagta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222397 |
ttcattttggattttcgttttcaggtaatatagagccaattccggcacttctgcagcgtgttattgatcactttattcaatggcatttacttccggagta |
40222298 |
T |
|
| Q |
401 |
caaaagaccaaatggttgtatcatcaacttttttgaagaggtaaattttgtaccatttctctcttaccactccttttaaagttattctaccttgtaatag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222297 |
caaaagaccaaatggttgtatcatcaacttttttgaagaggtaaattttgtaccatttctctcttaccactccttttaaagttattctaccttgtaatag |
40222198 |
T |
|
| Q |
501 |
tctctg |
506 |
Q |
| |
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|||||| |
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|
| T |
40222197 |
tctctg |
40222192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 37509351 - 37509238
Alignment:
| Q |
56 |
aggtgaaacttttatattattcaacaaacagatgaaaggtaacaagagagagctcattcagcttggtgttccaatatttggacagataaaggaggacaca |
155 |
Q |
| |
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|||||||||||||||| ||| ||||||||| |||| || |||||||||||| | |||||| | |||||||| ||||||| |||||||| || | || |
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| T |
37509351 |
aggtgaaacttttatactatataacaaacaggtgaaggggaacaagagagagatgattcagttaggtgttcccctatttgggcagataaaagacaatacc |
37509252 |
T |
|
| Q |
156 |
aaaagtaagaagaa |
169 |
Q |
| |
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|||||||||||||| |
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| T |
37509251 |
aaaagtaagaagaa |
37509238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 37509020 - 37508973
Alignment:
| Q |
400 |
acaaaagaccaaatggttgtatcatcaacttttttgaagaggtaaatt |
447 |
Q |
| |
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||||||| ||||||||||| ||||||||||| ||||| |||||||||| |
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| T |
37509020 |
acaaaaggccaaatggttgcatcatcaacttctttgatgaggtaaatt |
37508973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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