View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6304_high_5 (Length: 482)
Name: NF6304_high_5
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 30476662 - 30476203
Alignment:
| Q |
8 |
gagatgaaccattaaggaagatcctatcatgaatcttatgaagaggctcattcctccaatactcaaaagaagaagctcttgatccaagcttctttttact |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30476662 |
gagatgaaccattaaggaagatcctatcatgaatcttatgaagaggctcattcctccaatactcaaaagaagaagttcttgatccaagcttctttttact |
30476563 |
T |
|
| Q |
108 |
gttttttctattcttcctaaaagacgatgatgaggatgagggcgaattcggatgagggctcctgctttccgtagagaagcaggaccccatctttagggcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30476562 |
gttttttctattcttcctaaaagacgatgatgaggatgagggcgaattcggatgagggctcctgctttccgtagagaagcaggaccccatctttagggcc |
30476463 |
T |
|
| Q |
208 |
cttagaatgcttatcacacaatccagtacacctgaacaaaaactttcttctcttgatgaatccgtcacaacccacttaacaaaaacacacaaaaattgaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30476462 |
cttagaatgcttatcacacaatccagtacacctgaacaaaaactttcttctcttgatgaatccgtcacaacccacttaacaaaaacacacaaaaattgaa |
30476363 |
T |
|
| Q |
308 |
cctttttcacaaacacttcaccttcaacctcaaaactcaatagcccattacnnnnnnnaaacttttactacaattagtttttaaattacacaccttttca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30476362 |
cctttttcacaaacacttcaccttcaacctcaaaactcaatagcccattactttttttaaacttttactacaattagtttttaaattacacaccttttca |
30476263 |
T |
|
| Q |
408 |
gattgtgattggtaaattgaaatcattcattcatttacagtcatggattaagataaggat |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30476262 |
gattgtgattggtaaattgaaatcattcattcatttacagtcatggattaagataaggat |
30476203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 10148029 - 10148091
Alignment:
| Q |
238 |
cctgaacaaaaactttcttctcttgatgaatccgtcacaacccacttaacaaaaacacacaaa |
300 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10148029 |
cctgaacacaagctttcttctcttgatgaatccgtcataacccacttaacaaaaacacacaaa |
10148091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 10148133 - 10148191
Alignment:
| Q |
393 |
ttacacaccttttcagattgtgattggtaaattgaaatcattcattcatttacagtcat |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
10148133 |
ttacacaccttttcagattgtgattggtaaaatgaagtcattcattcatttatagtcat |
10148191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 10838369 - 10838415
Alignment:
| Q |
250 |
ctttcttctcttgatgaatccgtcacaacccacttaacaaaaacaca |
296 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
10838369 |
ctttcttctcttgatgaatccgtcataacaaacttaacaaaaacaca |
10838415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 32159046 - 32159100
Alignment:
| Q |
238 |
cctgaacaaaaactttcttctcttgatgaatccgtcacaacccacttaacaaaaa |
292 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
32159046 |
cctgaacacaaaatttcttctcttgacgaatccgtcataacaaacttaacaaaaa |
32159100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 32159115 - 32159172
Alignment:
| Q |
366 |
aaacttttactacaattagtttttaaattacacaccttttcagattgtgattggtaaa |
423 |
Q |
| |
|
||||||||| |||||| || || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
32159115 |
aaacttttattacaatcagagattgaattacacaccctttcagattgtgattggtaaa |
32159172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University