View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6304_high_7 (Length: 423)

Name: NF6304_high_7
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6304_high_7
NF6304_high_7
[»] chr1 (24 HSPs)
chr1 (312-409)||(3572361-3572458)
chr1 (228-274)||(3572277-3572323)
chr1 (36-84)||(3572121-3572169)
chr1 (173-225)||(47071961-47072013)
chr1 (186-225)||(51067910-51067949)
chr1 (182-229)||(17221532-17221579)
chr1 (172-207)||(20415650-20415685)
chr1 (182-225)||(37050935-37050978)
chr1 (187-229)||(24631841-24631883)
chr1 (184-229)||(1854271-1854316)
chr1 (184-225)||(4859089-4859130)
chr1 (172-229)||(6000145-6000202)
chr1 (172-221)||(8269370-8269419)
chr1 (184-229)||(49183175-49183220)
chr1 (172-229)||(49868013-49868070)
chr1 (184-229)||(52592441-52592486)
chr1 (185-221)||(8148380-8148416)
chr1 (185-221)||(12126768-12126804)
chr1 (185-229)||(19396206-19396250)
chr1 (173-221)||(19620586-19620634)
chr1 (184-216)||(26705615-26705647)
chr1 (185-221)||(35473962-35473998)
chr1 (185-225)||(42146321-42146361)
chr1 (185-225)||(47719122-47719162)
[»] chr2 (10 HSPs)
chr2 (182-230)||(7772472-7772520)
chr2 (182-228)||(12353659-12353705)
chr2 (183-225)||(23250333-23250375)
chr2 (184-229)||(8387899-8387944)
chr2 (184-229)||(9389470-9389515)
chr2 (184-229)||(30978364-30978409)
chr2 (184-225)||(32091185-32091226)
chr2 (185-221)||(11460827-11460863)
chr2 (185-229)||(23468059-23468103)
chr2 (185-225)||(35727443-35727483)
[»] chr6 (9 HSPs)
chr6 (182-225)||(2213303-2213346)
chr6 (172-229)||(8569711-8569768)
chr6 (182-229)||(9665312-9665359)
chr6 (182-229)||(21936045-21936092)
chr6 (184-225)||(9977063-9977104)
chr6 (184-229)||(30639440-30639485)
chr6 (172-225)||(31971535-31971588)
chr6 (173-209)||(12184530-12184566)
chr6 (185-229)||(32193874-32193918)
[»] chr5 (12 HSPs)
chr5 (182-229)||(18278271-18278318)
chr5 (172-225)||(13864350-13864403)
chr5 (172-225)||(16579376-16579429)
chr5 (182-225)||(5107257-5107300)
chr5 (182-225)||(39914907-39914950)
chr5 (172-229)||(4763188-4763245)
chr5 (172-225)||(20721056-20721109)
chr5 (184-221)||(22297395-22297432)
chr5 (184-225)||(36623188-36623229)
chr5 (192-225)||(42178827-42178860)
chr5 (185-229)||(7713534-7713578)
chr5 (185-229)||(25385054-25385098)
[»] chr3 (9 HSPs)
chr3 (182-225)||(10843793-10843836)
chr3 (182-227)||(41990596-41990641)
chr3 (182-229)||(46226089-46226136)
chr3 (183-229)||(43345020-43345066)
chr3 (172-229)||(5349530-5349587)
chr3 (192-229)||(48673869-48673906)
chr3 (185-229)||(37243226-37243270)
chr3 (185-229)||(39852178-39852221)
chr3 (173-221)||(48315027-48315075)
[»] chr8 (9 HSPs)
chr8 (182-216)||(15147041-15147075)
chr8 (182-225)||(7987741-7987784)
chr8 (172-231)||(12800902-12800961)
chr8 (170-225)||(29716700-29716755)
chr8 (182-225)||(40795383-40795426)
chr8 (187-229)||(10967214-10967256)
chr8 (187-229)||(14516394-14516436)
chr8 (184-221)||(39975500-39975537)
chr8 (185-221)||(26695320-26695356)
[»] chr4 (11 HSPs)
chr4 (173-225)||(13276135-13276187)
chr4 (185-229)||(41536924-41536968)
chr4 (182-229)||(25783153-25783200)
chr4 (182-229)||(56204949-56204996)
chr4 (191-229)||(44195325-44195363)
chr4 (187-229)||(55430598-55430640)
chr4 (184-229)||(20096284-20096329)
chr4 (172-225)||(42344620-42344673)
chr4 (185-229)||(21052572-21052616)
chr4 (172-216)||(42594557-42594601)
chr4 (185-225)||(44857201-44857241)
[»] chr7 (9 HSPs)
chr7 (170-221)||(39280818-39280869)
chr7 (187-225)||(15018011-15018049)
chr7 (172-229)||(19599147-19599204)
chr7 (188-229)||(22564160-22564201)
chr7 (184-225)||(45088882-45088923)
chr7 (185-229)||(10236920-10236964)
chr7 (185-229)||(34382951-34382995)
chr7 (185-225)||(39706626-39706666)
chr7 (185-225)||(44639647-44639687)
[»] scaffold0122 (1 HSPs)
scaffold0122 (172-229)||(14188-14245)
[»] scaffold0088 (1 HSPs)
scaffold0088 (184-229)||(48023-48068)
[»] scaffold0008 (1 HSPs)
scaffold0008 (184-225)||(122897-122938)
[»] scaffold0565 (1 HSPs)
scaffold0565 (185-229)||(6983-7027)
[»] scaffold0070 (1 HSPs)
scaffold0070 (185-225)||(42947-42987)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 312 - 409
Target Start/End: Original strand, 3572361 - 3572458
Alignment:
Q  312 gaattcttacagttgactcccatattttcctccatgatatcgtagccaaacacaaattttgatcaaatttcacatttttatttagtgaaaattgatat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3572361 gaattcttacagttgactcccatattttcctccatgatatcgtagccaaacacaaattttgatcaaatttcacatttttatttagtgaaaattgatat 3572458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 3572277 - 3572323
Alignment:
Q  228 tcccctaaaaatataaatggaaaagaaattaaaatagacttgtatgc 274  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  3572277 tcccctaaaaatataaatggaaaagaaattaatatagacttgtatgc 3572323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 3572121 - 3572169
Alignment:
Q  36 catacttttaaatacaaactgcccgaattggtaatttccgatattatca 84  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  3572121 catacttttaaatacaaattgcccgaataggtaatttccgatattatca 3572169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 47071961 - 47072013
Alignment:
Q  173 tttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  47071961 tttgaatcccggaccttgcatatattatgtattgttcttaccaattgagttaa 47072013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 51067910 - 51067949
Alignment:
Q  186 ccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  51067910 ccttgcatatattatgtattattcttaccaactgagttaa 51067949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 17221532 - 17221579
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||||| ||| |||||||||| | ||||||||||    
T  17221532 cggaccttgcatatattatgcattgttcttaccaacttagttaaactc 17221579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 20415650 - 20415685
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattat 207  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20415650 gtttgaatcacggaccttgcatatattatgtattat 20415685  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 37050978 - 37050935
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||    
T  37050978 cggaccttgcatattttatgcattattcataccaattgagttaa 37050935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 24631883 - 24631841
Alignment:
Q  187 cttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||    
T  24631883 cttgcatatattatgcattatccttaccaactgagttaaactc 24631841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 1854316 - 1854271
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||| ||||||| ||||||| |||||| ||||||||||||    
T  1854316 gaccttgcatctattatgcattattcctaccaactgagttaaactc 1854271  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 4859130 - 4859089
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||| |||||||||||||||||||||| ||| ||||||||    
T  4859130 gaccttacatatattatgtattattcttatcaactgagttaa 4859089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 6000145 - 6000202
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||| | |||||||||||||||||||| ||| | || ||||| ||||||||||||    
T  6000145 gtttgaacctcggaccttgcatatattatgcattgtcctaaccaactgagttaaactc 6000202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 8269370 - 8269419
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgag 221  Q
    ||||||| | |||||||||||||||||||||||| | |||||||| ||||    
T  8269370 gtttgaaccccggaccttgcatatattatgtattgtccttaccaactgag 8269419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 49183220 - 49183175
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||    
T  49183220 gaccttgcatatattatgtattgtccttaccaactgagctaaactc 49183175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 49868070 - 49868013
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||| | |||||||||||||||||||| ||||| | || ||| ||||||||||||    
T  49868070 gtttgaatctcggaccttgcatatattatgcattatccatatcaactgagttaaactc 49868013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 52592441 - 52592486
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||| |||| | ||||||||||||| |||||||    
T  52592441 gaccttgcatatattatatattgtccttaccaattgagctaaactc 52592486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 8148380 - 8148416
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgag 221  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  8148380 accttgcatatattatgtattgttcttaccaactgag 8148416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 12126804 - 12126768
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgag 221  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  12126804 accttgcatatattatgtattgttcttaccgattgag 12126768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 19396206 - 19396250
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||| ||||| | |||||| ||||||||||||    
T  19396206 accttgcatatattatgcattatccctaccaactgagttaaactc 19396250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 19620634 - 19620586
Alignment:
Q  173 tttgaagcacggaccttgcatatattatgtattattcttaccaattgag 221  Q
    |||||| | |||||||||||||||||||||||| | |||||||| ||||    
T  19620634 tttgaaccccggaccttgcatatattatgtattgtccttaccaactgag 19620586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 26705647 - 26705615
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaa 216  Q
    |||||||||||||||||||||| ||||||||||    
T  26705647 gaccttgcatatattatgtattgttcttaccaa 26705615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 35473998 - 35473962
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgag 221  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  35473998 accttgcatatattatgcattatccttaccaattgag 35473962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 42146361 - 42146321
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||| |||||||| || ||||||||||||    
T  42146361 accttgcatatattatatattattcgtatcaattgagttaa 42146321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 47719122 - 47719162
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||||||||||||| ||||| |||||||| ||||||||    
T  47719122 accttgcatatattatgcattatccttaccaactgagttaa 47719162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 7772472 - 7772520
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaactcc 230  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  7772472 cggaccttgcatatattatgcattatccttaccaattgagttaagctcc 7772520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 12353705 - 12353659
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaact 228  Q
    |||||| ||||||||||||| ||| | ||||||||||||||||||||    
T  12353705 cggaccctgcatatattatgcattgtccttaccaattgagttaaact 12353659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 23250333 - 23250375
Alignment:
Q  183 ggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||    
T  23250333 ggaccttgcatatattatgcattgttcttaccaactgagttaa 23250375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 8387899 - 8387944
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||| |||||||||| ||| | |||||||||||||||||||||    
T  8387899 gaccttgaatatattatgcattgtccttaccaattgagttaaactc 8387944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 9389515 - 9389470
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||  ||||| |||| ||||||||||||||||    
T  9389515 gaccttgcatatattatacattatccttatcaattgagttaaactc 9389470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 30978409 - 30978364
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||| ||||| | ||||||||||| |||||||    
T  30978409 gaccttgcatatattatgcattatccataccaattgagctaaactc 30978364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 32091185 - 32091226
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||| ||| | |||||||||||||||||    
T  32091185 gaccttgcatatattatgcattttccttaccaattgagttaa 32091226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 11460827 - 11460863
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgag 221  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  11460827 accttgcatatattatgcattattcctaccaattgag 11460863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 23468059 - 23468103
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||| ||| || |||| |||||||||||||||    
T  23468059 accttgcatatattatgcattgttgttacaaattgagttaaactc 23468103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 35727483 - 35727443
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||||||||||||| ||| |||||||||| ||||||||    
T  35727483 accttgcatatattatgcattgttcttaccaactgagttaa 35727443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 2213346 - 2213303
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  2213346 cggaccttgcatatattatgcattgttcttaccaattgagttaa 2213303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 8569768 - 8569711
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||| | |||||||||||||||||||| ||| | | |||||||||||||||||||    
T  8569768 gtttgaaccccggaccttgcatatattatgcattgtccataccaattgagttaaactc 8569711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 9665359 - 9665312
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||| |||||||||| |||| ||| |||||||||||||||||||    
T  9665359 cggaccttacatatattatatattgttcataccaattgagttaaactc 9665312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 21936045 - 21936092
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||||| ||| |||||||||| |||| |||||||    
T  21936045 cggaccttgcatatattatgaattgttcttaccaactgagctaaactc 21936092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 9977104 - 9977063
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||| ||||| | |||||||||||||||    
T  9977104 gaccttgcatatattatgcattatccataccaattgagttaa 9977063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 30639440 - 30639485
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||| ||||||| |||||| |||| |||||||    
T  30639440 gaccttgcatatattatgcattattcctaccaactgagctaaactc 30639485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 31971588 - 31971535
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||| | |||||||||||||||||||| ||| | |||||||| ||||||||    
T  31971588 gtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaa 31971535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 12184566 - 12184530
Alignment:
Q  173 tttgaagcacggaccttgcatatattatgtattattc 209  Q
    |||||| |||||||||||||||||||||| |||||||    
T  12184566 tttgaaccacggaccttgcatatattatgcattattc 12184530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 32193874 - 32193918
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||| ||| |||||||||| |||| |||||||    
T  32193874 accttgcatatattatgcattgttcttaccaactgagctaaactc 32193918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 18278271 - 18278318
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  18278271 cggaccttgcatatattatgcattgttcttaccaactgagttaaactc 18278318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 13864403 - 13864350
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||| | |||||||||||||||||||||||| ||| |||||| ||||||||    
T  13864403 gtttgaaccccggaccttgcatatattatgtattgttcataccaactgagttaa 13864350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 16579376 - 16579429
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||| |||||||||||||||||||||| ||| ||| |||||| ||||||||    
T  16579376 gtttgaaccacggaccttgcatatattatgcattgttcataccaactgagttaa 16579429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 5107257 - 5107300
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||    
T  5107257 cggaccttgcatatattatgcattattcataccaactgagttaa 5107300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 39914950 - 39914907
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||||| ||| | |||||||||||||||||    
T  39914950 cggaccttgcatatattatgcattgtccttaccaattgagttaa 39914907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 4763188 - 4763245
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||| | |||||||| ||||||||||| ||| |  ||||||||||||||||||||    
T  4763188 gtttgaaccccggaccttacatatattatgcattgtctttaccaattgagttaaactc 4763245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 20721109 - 20721056
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||| | |||||||||||||||||||||||| | | |||||| ||||||||    
T  20721109 gtttgaaccccggaccttgcatatattatgtattgtccataccaactgagttaa 20721056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 22297432 - 22297395
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgag 221  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  22297432 gaccttgcatatattatgtattgttcttaccaactgag 22297395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 36623188 - 36623229
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||| |||||||||| ||| ||||||||    
T  36623188 gaccttgcatatattatgcattattcttatcaactgagttaa 36623229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 42178827 - 42178860
Alignment:
Q  192 atatattatgtattattcttaccaattgagttaa 225  Q
    ||||||||||||||||||||| ||||||||||||    
T  42178827 atatattatgtattattcttatcaattgagttaa 42178860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 7713578 - 7713534
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||| ||||||| || ||| ||||||||||||    
T  7713578 accttgcatatattatgcattattcatatcaactgagttaaactc 7713534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 25385098 - 25385054
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||| ||||| ||| ||| |||||||||||||||||||    
T  25385098 accttgcatattttatgcattgttcataccaattgagttaaactc 25385054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 10843793 - 10843836
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||||||||||||| |||||| ||||||||    
T  10843793 cggaccttgcatatattatgtattattcataccaactgagttaa 10843836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 41990596 - 41990641
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaac 227  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||    
T  41990596 cggaccttgcatatattatgtattgttcttacaaactgagttaaac 41990641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 46226089 - 46226136
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||||| ||| | | |||||||||||||||||||    
T  46226089 cggaccttgcatatattatgcattgtccctaccaattgagttaaactc 46226136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 43345020 - 43345066
Alignment:
Q  183 ggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||||||||| ||| |||||| |||| |||||||    
T  43345020 ggaccttgcatatattatgtattgttcataccaactgagctaaactc 43345066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 5349587 - 5349530
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||| | |||||||||||||||| ||| ||| | |||||||| ||||||||||||    
T  5349587 gtttgaacctcggaccttgcatatataatgcattgtccttaccaagtgagttaaactc 5349530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 48673869 - 48673906
Alignment:
Q  192 atatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  48673869 atatattatgtattatccttaccaactgagttaaactc 48673906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 37243270 - 37243226
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||  ||| ||| |||||||||||||||||||    
T  37243270 accttgcatatattattcattgttcctaccaattgagttaaactc 37243226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 39852178 - 39852221
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||| |||||||||||||||||| |||||| ||||||||||||    
T  39852178 accttgtatatattatgtattattcataccaa-tgagttaaactc 39852221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 48315027 - 48315075
Alignment:
Q  173 tttgaagcacggaccttgcatatattatgtattattcttaccaattgag 221  Q
    |||||| | |||||||||||||||||||| ||||| |||||||| ||||    
T  48315027 tttgaaccccggaccttgcatatattatgcattatccttaccaactgag 48315075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 15147041 - 15147075
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaa 216  Q
    |||||||||||||||||||||||||||||||||||    
T  15147041 cggaccttgcatatattatgtattattcttaccaa 15147075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 7987741 - 7987784
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||||||||| | |||| ||||||||||||    
T  7987741 cggaccttgcatatattatgtattgtccttagcaattgagttaa 7987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 12800902 - 12800961
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaaactccc 231  Q
    ||||||| | |||||||||||||||||||||||| | | |||||| ||| ||||||||||    
T  12800902 gtttgaaccccggaccttgcatatattatgtattgtccataccaactgaattaaactccc 12800961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 29716700 - 29716755
Alignment:
Q  170 gagtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||||| | |||||||||||||||||||| ||| ||| |||||| ||||||||    
T  29716700 gagtttgaatcccggaccttgcatatattatgaattgttcctaccaactgagttaa 29716755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 40795426 - 40795383
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||    
T  40795426 cggaccttgcatatattatgtattgttcataccaactgagttaa 40795383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 10967256 - 10967214
Alignment:
Q  187 cttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||    
T  10967256 cttgcatatattatgcattgttcttatcaattgagttaaactc 10967214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 14516394 - 14516436
Alignment:
Q  187 cttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||||| |||||||||||| || |||||||    
T  14516394 cttgcatatattatgtattgttcttaccaattaagataaactc 14516436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 39975537 - 39975500
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgag 221  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  39975537 gaccttacatatattatgtattgttcttaccaattgag 39975500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 26695320 - 26695356
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgag 221  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  26695320 accttgcatatattatgtattatccttaacaattgag 26695356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 13276187 - 13276135
Alignment:
Q  173 tttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||| |||||||||||||||||||||| ||| | | |||||||||||||||    
T  13276187 tttgaaacacggaccttgcatatattatgcattgtccctaccaattgagttaa 13276135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 41536968 - 41536924
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||    
T  41536968 accttgcatatattatgtattgtccttatcaattgagttaaactc 41536924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 25783200 - 25783153
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||| |||||||||| | |||||| ||||||||||||    
T  25783200 cggaccttgcatatactatgtattatccctaccaactgagttaaactc 25783153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 56204996 - 56204949
Alignment:
Q  182 cggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||||| ||| | |||||||| ||||||||||||    
T  56204996 cggaccttgcatatattatgcattgtccttaccaactgagttaaactc 56204949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 44195325 - 44195363
Alignment:
Q  191 catatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  44195325 catatattatgtattattcctaccaactgagttaaactc 44195363  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 55430640 - 55430598
Alignment:
Q  187 cttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||    
T  55430640 cttgcatatattatgcattattcctaccaactgagttaaactc 55430598  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 20096284 - 20096329
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||| ||||| | |||||| ||||||||||||    
T  20096284 gaccttgcatatattatgcattatccctaccaactgagttaaactc 20096329  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 42344620 - 42344673
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||| | |||||||||||||||||||  ||| ||| |||||||||||||||    
T  42344620 gtttgaacctcggaccttgcatatattatacattgttcctaccaattgagttaa 42344673  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 21052572 - 21052616
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||||||||| | |||||| |||| |||||||    
T  21052572 accttgcatatattatgtattatccataccaactgagctaaactc 21052616  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 42594601 - 42594557
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaa 216  Q
    ||||||| | |||| |||||||||||||||||||||| |||||||    
T  42594601 gtttgaatctcggatcttgcatatattatgtattatttttaccaa 42594557  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 44857201 - 44857241
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||||||||   |||||||||||||||    
T  44857201 accttgcatatattatgtattatctataccaattgagttaa 44857241  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 39280818 - 39280869
Alignment:
Q  170 gagtttgaagcacggaccttgcatatattatgtattattcttaccaattgag 221  Q
    ||||||||| | |||||||||||||||||||| ||| |||||||||| ||||    
T  39280818 gagtttgaaccccggaccttgcatatattatgcattgttcttaccaactgag 39280869  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 15018049 - 15018011
Alignment:
Q  187 cttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  15018049 cttgcatatattattcattattcttaccaattgagttaa 15018011  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 19599204 - 19599147
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||| | |||||||||||||||||||| ||| | | |||||| ||||||||||||    
T  19599204 gtttgaaccccggaccttgcatatattatgcattgtccataccaactgagttaaactc 19599147  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 22564160 - 22564201
Alignment:
Q  188 ttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||| ||||||||| |||||| ||||||||||||    
T  22564160 ttgcatatattacgtattattcctaccaactgagttaaactc 22564201  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 45088923 - 45088882
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||| ||| ||| |||||||||||||||    
T  45088923 gaccttgcatatattatgcattgttcataccaattgagttaa 45088882  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 10236920 - 10236964
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||| |||||| ||| |||||||||| ||||||||||||    
T  10236920 accttgcatacattatgcattgttcttaccaactgagttaaactc 10236964  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 34382951 - 34382995
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||||||||||||||||||||| |||||| |||  |||||||    
T  34382951 accttgcatatattatgtattattcataccaactgatataaactc 34382995  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 39706666 - 39706626
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||||||||||||||||| ||  |||||||||||||||    
T  39706666 accttgcatatattatgtattgtttataccaattgagttaa 39706626  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 44639687 - 44639647
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||| ||||||||||||||| ||| |||||||||||||||    
T  44639687 accttacatatattatgtattgttcataccaattgagttaa 44639647  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 14188 - 14245
Alignment:
Q  172 gtttgaagcacggaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||||| |||  ||||||||||||||||| ||| ||| |||||| ||||||||||||    
T  14188 gtttgaaccacataccttgcatatattatgcattgttcataccaactgagttaaactc 14245  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 48068 - 48023
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    |||||||||||||||||| ||||| |||| ||| ||||||||||||    
T  48068 gaccttgcatatattatgcattatgcttatcaactgagttaaactc 48023  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 122938 - 122897
Alignment:
Q  184 gaccttgcatatattatgtattattcttaccaattgagttaa 225  Q
    |||||||||||||||||| ||| ||| |||||||||||||||    
T  122938 gaccttgcatatattatgcattgttcataccaattgagttaa 122897  T

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Target: scaffold0565 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 6983 - 7027
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaaactc 229  Q
    ||||| ||||||||||||||| | ||||||||||||| |||||||    
T  6983 accttacatatattatgtattgtccttaccaattgagataaactc 7027  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 42947 - 42987
Alignment:
Q  185 accttgcatatattatgtattattcttaccaattgagttaa 225  Q
    ||||||||||||||||| |||||||||| ||| ||||||||    
T  42947 accttgcatatattatgcattattcttatcaactgagttaa 42987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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