View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_high_8 (Length: 422)
Name: NF6304_high_8
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 52713975 - 52713588
Alignment:
| Q |
19 |
agacggggacagaacctgtcgggatttcgaagttgtttcctagttttctattcatgatgctggcttgacttaaaaagaaggttgacatttgagcgaaaga |
118 |
Q |
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| T |
52713975 |
agacggggacagaacctgtcgggatttcgaagttgtttcctagttttctattcatgatgctggcttgacttaaaaagaaggttgacatttgagcgaaaga |
52713876 |
T |
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| Q |
119 |
aatagcaagagcaatggtagatgcccacactggaaggattttaatgaatgatttgaactcttccacttgtgtcactgtgcatacactccatctgttactg |
218 |
Q |
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| T |
52713875 |
aatagcaagagcaatggtagatgcccacactggaaggattttaatgaatgatttgaactcttccacttgtgtcactgtgcatacactccatctgttgctg |
52713776 |
T |
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| Q |
219 |
agtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaaaattaatttgctccgatcttattctcatataccaagattaaattaatcaaca |
318 |
Q |
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| T |
52713775 |
agtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaaaattaatttgctccgatcttattctcatataccaagattaaattaatcaaca |
52713676 |
T |
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| Q |
319 |
tcacgcttagttatgtgatttcgatcataaattaagcttagtttataacactaaaaagtcaacaaatatgaaaactagatcatctaac |
406 |
Q |
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| T |
52713675 |
tcacgcttagttatgtgatttcgatcataaaataagcttagtttataacactaaaaagtcaacaaatatgaaaactagatcatctaac |
52713588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 52723002 - 52722660
Alignment:
| Q |
14 |
agcagagacggggacagaacctgtcgggatttcgaagttgtttcctagttttctattcatgatgctggcttgacttaaaaagaaggttgacatttgagcg |
113 |
Q |
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| T |
52723002 |
agcaaagacagggacagaacctgttgggatttcgaacttgtttcctagttttctattcatgatgctggcttgactaagaaagaaggttgacacttgagcg |
52722903 |
T |
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| Q |
114 |
aaagaaatagcaagagcaatggtagatgcccacactggaaggattttaatgaatgatttgaactcttccacttgtgtcactgtgcatacactccatctgt |
213 |
Q |
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| T |
52722902 |
aaagaaatagcaagagcaatggtagaggccgatactggaaggattttaacgaatgatttgaattcttcgacttgtgtcactgtgcatacactccatctgt |
52722803 |
T |
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| Q |
214 |
tactgagtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaaaattaatttgctccgatcttattctcatataccaagattaaattaat |
313 |
Q |
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| T |
52722802 |
tgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaaaattaatttgctccaatcttattctcata-gccaagattaaattaat |
52722704 |
T |
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| Q |
314 |
caacatcacgc-ttagttatgtgatttcgatcataaattaagct |
356 |
Q |
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| T |
52722703 |
taacatcacactttagttatgcaatttcgattatacattaagct |
52722660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 69 - 288
Target Start/End: Complemental strand, 52699651 - 52699432
Alignment:
| Q |
69 |
ttcatgatgctggcttgacttaaaaagaaggttgacatttgagcgaaagaaatagcaagagcaatggtagatgcccacactggaaggattttaatgaatg |
168 |
Q |
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|||||||| |||||||||||| ||| |||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699651 |
ttcatgattttggcttgacttagaaaccaggttgacatttgagccaaagagatagaaatagcaatggtagatgcccacactggaaggattttaatgaatg |
52699552 |
T |
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| Q |
169 |
atttgaactcttccacttgtgtcactgtgcatacactccatctgttactgagtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaaaa |
268 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||| || | |||||| |||||||| ||||||||||||||||||||||| |||||||| |
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| T |
52699551 |
atttgaattcttcgacttgtgtcactgtgcatacactccatctgttgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaaaa |
52699452 |
T |
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| Q |
269 |
ttaatttgctccgatcttat |
288 |
Q |
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|||||||||||| ||||||| |
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| T |
52699451 |
ttaatttgctccaatcttat |
52699432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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