View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_low_1 (Length: 611)
Name: NF6304_low_1
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_low_1 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 36 - 595
Target Start/End: Complemental strand, 4878 - 4329
Alignment:
| Q |
36 |
aatagtgtgacaaaaatgcaattaattaatctattatattggttgaggtagaaaattagaataatgtcttgaaatgcaacaaagaacatttgtgacacct |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4878 |
aatagtgtgacaaaaatgcaattaattaatctattatattggttgaggtagaaaattagaataatg----------caacaaagaacatttgtgacacct |
4789 |
T |
|
| Q |
136 |
ttcactaagaaaaagaacatccaaatttgctaggtttatgtagttttcatattatactaagaatactttattgtcataaacataacaaataaatcttgct |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
4788 |
ttcactaagaaaaagaacatccaaatttgctaggtttatgtagttttcatattttactaataaccctttattgtcataaacataacaaataaatcttgct |
4689 |
T |
|
| Q |
236 |
ttccttgatattattttgcaaccaaagttatcaaaagagagttagcaaaagtgacaattgaatacacttaactctcaactgtcttctccattccatatct |
335 |
Q |
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| T |
4688 |
ttccttgatattattttgcaaccaaagttatcaaaagagagttagcaaaagtgacaattgaatacacttaactctcaactgtcttctccactccatatct |
4589 |
T |
|
| Q |
336 |
aaactacagttattctgttgtagcaagatagtgacattgcatgtgcttaatttctagaaacattaaggtttatttaatagtttgacttgatgacattaaa |
435 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
4588 |
aaactacagttattctgttgtaccaagatagtgacattgcatgtgcttaatttctagaaacattaaggtttatttaatagcttgaattgatgacattaaa |
4489 |
T |
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| Q |
436 |
gtgtaccagtggtctatgaactacagagctccaaagcattgaaaaaacacttaaaaaagcaaccatcatacattaatacttagataacagattagtttat |
535 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488 |
gtctacctgtggtctatgaactacagagctccaaagcattgaaaaaacacttaaaaaagcaaccatcatacattaatacttagataacagattagtttat |
4389 |
T |
|
| Q |
536 |
cgcttataggataagtgtttctcatatatgtgcttatatataatctatttctataaaaaa |
595 |
Q |
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| T |
4388 |
cgcttataggataagtgtttctcatatatgtgcttatatataatctatttctataaaaaa |
4329 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 591
Target Start/End: Complemental strand, 20982298 - 20982244
Alignment:
| Q |
537 |
gcttataggataagtgtttctcatatatgtgcttatatataatctatttctataa |
591 |
Q |
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| T |
20982298 |
gcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataa |
20982244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 591
Target Start/End: Original strand, 8629025 - 8629070
Alignment:
| Q |
546 |
ataagtgtttctcatatatgtgcttatatataatctatttctataa |
591 |
Q |
| |
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| T |
8629025 |
ataagtgtttatcatataagtgcttatttataagctatttctataa |
8629070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 591
Target Start/End: Complemental strand, 3645977 - 3645925
Alignment:
| Q |
539 |
ttataggataagtgtttctcatatatgtgcttatatataatctatttctataa |
591 |
Q |
| |
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|||||| |||||||||| ||||||| |||||| | ||||| |||||||||||| |
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| T |
3645977 |
ttatagcataagtgtttatcatataagtgcttgtgtataagctatttctataa |
3645925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 591
Target Start/End: Complemental strand, 2980625 - 2980580
Alignment:
| Q |
546 |
ataagtgtttctcatatatgtgcttatatataatctatttctataa |
591 |
Q |
| |
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|||||||||| ||||||| |||||||| ||||| |||||||||||| |
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| T |
2980625 |
ataagtgtttatcatataagtgcttatgtataagctatttctataa |
2980580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 591
Target Start/End: Complemental strand, 16790249 - 16790197
Alignment:
| Q |
539 |
ttataggataagtgtttctcatatatgtgcttatatataatctatttctataa |
591 |
Q |
| |
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|||||| ||||| |||| ||||||| |||||||||||||| ||||||||||| |
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| T |
16790249 |
ttatagcataagcgtttatcatataagtgcttatatataagttatttctataa |
16790197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 590
Target Start/End: Complemental strand, 11393528 - 11393476
Alignment:
| Q |
538 |
cttataggataagtgtttctcatatatgtgcttatatataatctatttctata |
590 |
Q |
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||||||| | |||||||| ||||||| |||||||| ||||| ||||||||||| |
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| T |
11393528 |
cttatagcacaagtgtttatcatataagtgcttatctataagctatttctata |
11393476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 590
Target Start/End: Complemental strand, 11410189 - 11410137
Alignment:
| Q |
538 |
cttataggataagtgtttctcatatatgtgcttatatataatctatttctata |
590 |
Q |
| |
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||||||| | |||||||| ||||||| |||||||| ||||| ||||||||||| |
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| T |
11410189 |
cttatagcacaagtgtttatcatataagtgcttatctataagctatttctata |
11410137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 595
Target Start/End: Complemental strand, 48748731 - 48748687
Alignment:
| Q |
551 |
tgtttctcatatatgtgcttatatataatctatttctataaaaaa |
595 |
Q |
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||||| |||||||||||||||| ||||| ||||||||||| |||| |
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| T |
48748731 |
tgtttatcatatatgtgcttatgtataagctatttctatacaaaa |
48748687 |
T |
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