View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_low_11 (Length: 409)
Name: NF6304_low_11
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 16520468 - 16520662
Alignment:
| Q |
17 |
gttttaaaaaatataatcttaggaaatgtctgttaagttcttcgatgtatatgtctgtcttgttgcttacataaatgaccatataacctttgtaagcaac |
116 |
Q |
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| T |
16520468 |
gtttaaaaaaaaataatcttaggaaatgtctgttaagttcttcgatgtatatgtctgtcttgtagcttacataaatgatcatataacctttgtaagcaac |
16520567 |
T |
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| Q |
117 |
acaaaacaaattatcggtggtcatgagaggtcattcnnnnnnncatcaaccattcatgattatttttatttatatgttagggtttcatgatggac |
211 |
Q |
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| T |
16520568 |
acacaacaaattatcggtggtcatgagaggtcattctttttttcatcaaccattcatgattatttttatttatatgttagggtttcatgatggac |
16520662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 251 - 401
Target Start/End: Original strand, 16520703 - 16520859
Alignment:
| Q |
251 |
tcctaaatgtataataatagtaaggggtctggtgtagtttcattggtggtgtgagttagcttgttgtaggacttcaacattttct------tttgttcta |
344 |
Q |
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||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16520703 |
tcctaaatgtataataatagtaaggggcatgctgcagtttcattggtggtgtgagttagcttgttgtaggacttcaacattttcttctgtgtttgttcta |
16520802 |
T |
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| Q |
345 |
tctcagtttttctctctaaatatacattcttttatttaatgaacaatctttcatctc |
401 |
Q |
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| T |
16520803 |
tctcagtttttctctctaaatatagattcttttatttaatgaacaatctttcatctc |
16520859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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