View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6304_low_12 (Length: 361)

Name: NF6304_low_12
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6304_low_12
NF6304_low_12
[»] chr4 (30 HSPs)
chr4 (18-357)||(48876010-48876349)
chr4 (18-357)||(48886392-48886731)
chr4 (18-357)||(48870706-48871045)
chr4 (160-294)||(45365859-45365993)
chr4 (25-137)||(48705169-48705281)
chr4 (173-294)||(7790381-7790502)
chr4 (173-314)||(7771696-7771837)
chr4 (171-277)||(7773481-7773587)
chr4 (175-357)||(48734987-48735169)
chr4 (169-294)||(45384531-45384662)
chr4 (176-278)||(7237398-7237500)
chr4 (171-278)||(7765941-7766048)
chr4 (171-260)||(7786763-7786852)
chr4 (174-278)||(48147368-48147472)
chr4 (174-278)||(48156084-48156188)
chr4 (169-278)||(48903255-48903361)
chr4 (171-213)||(7878045-7878087)
chr4 (227-314)||(7878738-7878825)
chr4 (169-279)||(48899037-48899147)
chr4 (39-132)||(48735194-48735287)
chr4 (171-291)||(37826632-37826752)
chr4 (174-278)||(48864337-48864441)
chr4 (227-314)||(7908657-7908744)
chr4 (227-278)||(45371729-45371780)
chr4 (227-294)||(48853036-48853103)
chr4 (34-116)||(45371876-45371958)
chr4 (169-203)||(50669382-50669416)
chr4 (152-205)||(43596153-43596206)
chr4 (232-293)||(49038518-49038579)
chr4 (231-291)||(49043810-49043870)
[»] chr5 (4 HSPs)
chr5 (178-264)||(179364-179450)
chr5 (176-277)||(9120067-9120168)
chr5 (228-286)||(29688485-29688543)
chr5 (178-291)||(29712083-29712196)
[»] chr3 (4 HSPs)
chr3 (169-294)||(47451539-47451664)
chr3 (169-214)||(11024216-11024261)
chr3 (169-276)||(11015148-11015249)
chr3 (169-278)||(11005583-11005686)
[»] chr8 (6 HSPs)
chr8 (169-295)||(15349180-15349306)
chr8 (171-261)||(4962191-4962281)
chr8 (171-261)||(12195623-12195713)
chr8 (171-261)||(12440051-12440141)
chr8 (171-278)||(12200641-12200748)
chr8 (171-278)||(12445069-12445176)
[»] chr6 (1 HSPs)
chr6 (34-98)||(21015998-21016062)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 48876010 - 48876349
Alignment:
Q  18 aggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaacttttt 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  48876010 aggttccctctatcacggggctattcattggttggcttatcgtgatgatttacaaaagaatgttatccttgcctttgatttcactgaaaggcaacttttt 48876109  T
Q  118 gatatgcatttgccagatgattattataattataactatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggctatggatt 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48876110 gatatgcatttgccagatgattattacaattataactatgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgctatggatt 48876209  T
Q  218 ataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctgacga 317  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| ||||||| | |||||||||||||| || ||    
T  48876210 ataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatga 48876309  T
Q  318 gtccttttccccattgtgctgtacaaaaaatggtgatatt 357  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  48876310 gtccttttccccattgtgctgtacaaaaagtggtgatatt 48876349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 48886392 - 48886731
Alignment:
Q  18 aggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaacttttt 117  Q
    ||||||||||||| | |||||||||||||||||||||||| ||| || ||||  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  48886392 aggttccctctataatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgatttaacggaaaggcaacttttt 48886491  T
Q  118 gatatgcatttgccagatgattattataattataactatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggctatggatt 217  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48886492 gatatgcttttaccagatgattattacaattataactatgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgctatggatt 48886591  T
Q  218 ataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctgacga 317  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||||| ||    
T  48886592 ataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctgatga 48886691  T
Q  318 gtccttttccccattgtgctgtacaaaaaatggtgatatt 357  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  48886692 gtccttttccccattgtgctgtacaaaaagtggtgatatt 48886731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 48870706 - 48871045
Alignment:
Q  18 aggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaacttttt 117  Q
    ||||||||||||| | |||||||||||||||||||||||| ||| || ||||  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  48870706 aggttccctctataatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgatttaacggaaaggcaacttttt 48870805  T
Q  118 gatatgcatttgccagatgattattataattataactatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggctatggatt 217  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48870806 gatatgcttttaccagatgattattacaattataactatgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgctatggatt 48870905  T
Q  218 ataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctgacga 317  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| ||||||| | |||||||||||||| || ||    
T  48870906 ataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatga 48871005  T
Q  318 gtccttttccccattgtgctgtacaaaaaatggtgatatt 357  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  48871006 gtccttttccccattgtgctgtacaaaaagtggtgatatt 48871045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 45365993 - 45365859
Alignment:
Q  160 cctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaataca 259  Q
    |||||| | |||||||||||||||||||| |||||| ||||| | ||||||||||||||| || || |||||||||||||||||||||||||  |||| |    
T  45365993 cctcacgattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatata 45365894  T
Q  260 aagtgaactcgtcttggacaaatactcatgttctt 294  Q
    |||||   |||||||||||||| ||||| ||||||    
T  45365893 aagtgcgttcgtcttggacaaagactcacgttctt 45365859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 48705281 - 48705169
Alignment:
Q  25 ctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaactttttgatatgc 124  Q
    |||||| | |||||||||||||||||||||||| || ||||||||| ||||  ||||||  ||||||||||||||| ||||||| |||||||||||||||    
T  48705281 ctctataatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaactttttgatatgc 48705182  T
Q  125 atttgccagatga 137  Q
     ||||||||||||    
T  48705181 ttttgccagatga 48705169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 7790381 - 7790502
Alignment:
Q  173 gtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtc 272  Q
    |||||||||||||||| |||||||||||| |||| |||| ||||||| || || ||||| |||||||||||||||||||  ||||||||||| | |||||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  273 ttggacaaatactcatgttctt 294  Q
    |||||| || |||| |||||||    
T  7790481 ttggactaaaactcttgttctt 7790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 7771696 - 7771837
Alignment:
Q  173 gtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtc 272  Q
    |||||||||||||||| |||||||||||| |||| |||| ||||||| || || ||||| ||| |||||||||||||||  ||||||||||| | |||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  273 ttggacaaatactcatgttcttaccgttgatgacatttctga 314  Q
     ||||| || |||| ||||||| | ||||||| |||| ||||    
T  7771796 atggactaaaactcttgttctttctgttgatgccattcctga 7771837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 7773587 - 7773481
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||||||| |||| ||| ||| ||||||||| |||| ||  | || |||||||||||||||||||||||||  ||||||||||| | |||    
T  7773587 tggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 7773488  T
Q  271 tcttgga 277  Q
    |||||||    
T  7773487 tcttgga 7773481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 357
Target Start/End: Complemental strand, 48735169 - 48734987
Alignment:
Q  175 ttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtctt 274  Q
    |||||||||||||| |||||||||||| | | | ||||| ||| || | |||||||||||   ||||||  ||||||  ||||||||||||| |||||||    
T  48735169 ttgtgggtatttggagaatttctcagtttttcgactatgaattttagtaataatacagttatgatatggacgatgaaagaatacaaagtgaattcgtctt 48735070  T
Q  275 ggacaaatactcatgttcttaccgttgatgacatttctgacgagtccttttccccattgtgctgtacaaaaaatggtgatatt 357  Q
    |||| || ||||||| | |  | ||||||| || | |  |||||  |||||||||||| || |||||||||||||||||||||    
T  48735069 ggactaaaactcatgctgtgtctgttgatggcactcccaacgagagcttttccccattttgttgtacaaaaaatggtgatatt 48734987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 45384662 - 45384531
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataata------cagttgaaatatgggtgatgaacaaatacaaag 262  Q
    |||||||||||||||||||| |||||||||||| | || |||||| ||||| || ||| ||      ||||||||||||||||||||||  |||| ||||    
T  45384662 tgtggtttgtgggtatttggagaatttctcagtttttgagctatgcattatgataatattaatatttcagttgaaatatgggtgatgaaagaatataaag 45384563  T
Q  263 tgaactcgtcttggacaaatactcatgttctt 294  Q
    || | |||||||||||||| |||| |||||||    
T  45384562 tgcattcgtcttggacaaagactcgtgttctt 45384531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 7237500 - 7237398
Alignment:
Q  176 tgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttg 275  Q
    ||||||||||||| |||||||||||||||||||||  ||||||| || || ||||| ||| |||||||||||||||  |||||||| || | |||| |||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttg 7237401  T
Q  276 gac 278  Q
    |||    
T  7237400 gac 7237398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 7765941 - 7766048
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||| ||| |||||||||||| |||||| || ||||  || | || ||||| |||||||||||||||||||  ||||||||||| | |||    
T  7765941 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 7766040  T
Q  271 tcttggac 278  Q
    || |||||    
T  7766041 tcatggac 7766048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 7786763 - 7786852
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaa 260  Q
    |||||||||||||| |||||||||||||||| |||||| || ||||  || | || ||||| |||||||||||||||||||  |||||||    
T  7786763 tggtttgtgggtatctggggaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaa 7786852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 48147472 - 48147368
Alignment:
Q  174 tttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtct 273  Q
    |||||||||||||||  ||||||||||||||  || ||||||| || |  |||  | |||||||||||||||||||||  ||||||||||| | ||||||    
T  48147472 tttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtct 48147373  T
Q  274 tggac 278  Q
    |||||    
T  48147372 tggac 48147368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 48156188 - 48156084
Alignment:
Q  174 tttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtct 273  Q
    ||||||||||||||| |||||||||||| |||||||| | ||||    | || | | |||||||||||||||||||||| ||||||||||| | || |||    
T  48156188 tttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttct 48156089  T
Q  274 tggac 278  Q
    |||||    
T  48156088 tggac 48156084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 48903255 - 48903361
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||| ||| ||||||||||| |||||||| || ||||||||| |||||||    ||||||| | |||||||||||||||||||  ||||||||||| | |    
T  48903255 tgtgatttatgggtatttggagaatttcttagcctatgggctttggattac---gataataaatttgaaatatgggtgatgaaagaatacaaagtgcatt 48903351  T
Q  269 cgtcttggac 278  Q
     |||||||||    
T  48903352 tgtcttggac 48903361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 7878045 - 7878087
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatg 213  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  7878045 tggtttgtgggtatttggagaatttctcagtctatgggctatg 7878087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 7878738 - 7878825
Alignment:
Q  227 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctga 314  Q
    |||||||||||||||||||||||||  ||||||||||| | || |||||||  || |||| ||||||| | ||||||| |||| ||||    
T  7878738 atacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctttcggttgatgtcattcctga 7878825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 48899037 - 48899147
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||||||||||||| ||||| || ||| ||||| ||||||||    |||||  | || |||||||||||||||||||||||||  |||| ||||| || |    
T  48899037 tgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatataaagtaaaat 48899136  T
Q  269 cgtcttggaca 279  Q
    | |||||||||    
T  48899137 cctcttggaca 48899147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 48735287 - 48735194
Alignment:
Q  39 tattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaactttttgatatgcatttgcca 132  Q
    |||||||||||||||||||  | |||||||||  ||| |||||||   || ||||||||||| | ||||| |||||||| ||||| ||||||||    
T  48735287 tattcattggttggcttatcatcatgatttacgtaagggtgttattgctgtctttgatttaatgtaaaggaaacttttttatatggatttgcca 48735194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 291
Target Start/End: Complemental strand, 37826752 - 37826632
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||    | || || ||||| || || || ||||||||||  |||||||| || | |||    
T  37826752 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcg 37826653  T
Q  271 tcttggacaaatactcatgtt 291  Q
    |||||||| || |||| ||||    
T  37826652 tcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 48864337 - 48864441
Alignment:
Q  174 tttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtct 273  Q
    ||||||||| ||||| || ||| ||||||||||| ||| || |    |||||| ||  ||||||||||||||||||||  ||||||||||| | ||||||    
T  48864337 tttgtgggtctttggagagtttatcagtctatggtctaggggtggatatgatactatcgttgaaatatgggtgatgaaagaatacaaagtgcattcgtct 48864436  T
Q  274 tggac 278  Q
    |||||    
T  48864437 tggac 48864441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 7908657 - 7908744
Alignment:
Q  227 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctga 314  Q
    ||||| |||||||||||||||||||  ||||||||||| | || |||||||  || |||| ||||||| | ||||||| |||| ||||    
T  7908657 atacacttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatgccattcctga 7908744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 45371780 - 45371729
Alignment:
Q  227 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggac 278  Q
    ||||||||||||||||||| |||||  ||||||||||| | |||||||||||    
T  45371780 atacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggac 45371729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 48853036 - 48853103
Alignment:
Q  227 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttctt 294  Q
    ||||||||||||||||||| |||||  |||||||||||   ||||||||||| || |||| |||||||    
T  48853036 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 48853103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 45371958 - 45371876
Alignment:
Q  34 ggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaactttt 116  Q
    ||||||||| |||||||| ||| | || ||||||||   | ||||||||| |||||||||||||||| |||| || |||||||    
T  45371958 ggggctatttattggttgtcttttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaactttt 45371876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 50669382 - 50669416
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtct 203  Q
    |||||||||||||||||||| ||||||||||||||    
T  50669382 tgtggtttgtgggtatttggagaatttctcagtct 50669416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 43596206 - 43596153
Alignment:
Q  152 actatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctat 205  Q
    ||||||||||| | || |||| | |||||||||||||||||||||| |||||||    
T  43596206 actatgatcctaaaaattgtgatatgtgggtatttggggaatttcttagtctat 43596153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 49038579 - 49038518
Alignment:
Q  232 gttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttct 293  Q
    ||||||||||||||||||||  ||||||||||  | ||||||||||| || |||| ||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 49043870 - 49043810
Alignment:
Q  231 agttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgtt 291  Q
    |||||||||||||||||||||  ||||||||||| | ||||| ||||| || |||| ||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 179364 - 179450
Alignment:
Q  178 tgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtg 264  Q
    |||||||||||  ||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||  |||||||||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtg 179450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 9120067 - 9120168
Alignment:
Q  176 tgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttg 275  Q
    ||||||||||||| |||||||||||| ||||||||||||||| |  | || |||||||||||||||||||||||||  ||||||||||| | || |||||    
T  9120067 tgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttg 9120166  T
Q  276 ga 277  Q
    ||    
T  9120167 ga 9120168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 29688485 - 29688543
Alignment:
Q  228 tacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactc 286  Q
    |||||||||||||||||||||||| |||||||| ||| | |||||||||||||| ||||    
T  29688485 tacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactc 29688543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 29712196 - 29712083
Alignment:
Q  178 tgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttgga 277  Q
    ||||||||| | | || |||||||||||||| |||||   || || ||  |||||||||||||||||||||| | |||||||| ||||  || |||||||    
T  29712196 tgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttgga 29712097  T
Q  278 caaatactcatgtt 291  Q
    | || |||| ||||    
T  29712096 ctaagactcttgtt 29712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 47451664 - 47451539
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||||||||||||||||||| |||||||| |||||| ||| | |||||| | || || ||| |||||||||||||||||||||  |||||||||| || |    
T  47451664 tgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaatt 47451565  T
Q  269 cgtcttggacaaatactcatgttctt 294  Q
    ||||||||  ||| |||| |||||||    
T  47451564 cgtcttgggaaaagactcttgttctt 47451539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 11024261 - 11024216
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatgg 214  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  11024261 tgtgatttgtggatatttggagaatttctcagtctatgggctatgg 11024216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 11015249 - 11015148
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||| ||||||| ||||||| |||||||| ||||||||||||||||      | |||   ||||||||||||||||| |||||  ||||||||||| | |    
T  11015249 tgtgatttgtggatatttggagaatttctaagtctatgggctatgg------aggatggaacagttgaaatatgggttatgaaagaatacaaagtgcatt 11015156  T
Q  269 cgtcttgg 276  Q
    ||||||||    
T  11015155 cgtcttgg 11015148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 11005686 - 11005583
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||| ||||||| ||||||| |||||||| ||||||||||||||||        ||| | ||| ||||||||||||| |||||  ||||||||||| | |    
T  11005686 tgtgatttgtggatatttggagaatttcttagtctatgggctatgg------gggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcatt 11005593  T
Q  269 cgtcttggac 278  Q
    ||||||||||    
T  11005592 cgtcttggac 11005583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 15349180 - 15349306
Alignment:
Q  169 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 268  Q
    |||||||||||||| ||||| |||||| | ||||| ||| ||| |||||||  | || |||   |||||||||||||||||||  |||||||||||||||    
T  15349180 tgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaact 15349279  T
Q  269 cgtcttggacaaatactcatgttctta 295  Q
    | ||||||||||| | || ||||||||    
T  15349280 cttcttggacaaagattcttgttctta 15349306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 4962281 - 4962191
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaa 261  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||||    ||  || |||||||||||||||||||||  ||||||||    
T  4962281 tggtttgtgggtatttggagaatttctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaa 4962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 12195623 - 12195713
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaa 261  Q
    ||||||||||||||||||  |||||||||||||||||  |||| ||| | || ||   |||||||||||||||| ||||||  ||||||||    
T  12195623 tggtttgtgggtatttggaaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaa 12195713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 12440051 - 12440141
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaa 261  Q
    ||||||||||||||||||  |||||||||||||||||  |||| ||| | || ||   |||||||||||||||| ||||||  ||||||||    
T  12440051 tggtttgtgggtatttggaaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaa 12440141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 12200641 - 12200748
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||||||| |||||||| |||||||||  |||| ||| | || || | ||  |||||||||||| |||||| | ||||||| ||   |||    
T  12200641 tggtttgtgggtatttggagaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcg 12200740  T
Q  271 tcttggac 278  Q
    ||||||||    
T  12200741 tcttggac 12200748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 12445069 - 12445176
Alignment:
Q  171 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 270  Q
    |||||||||||||||||| |||||||| |||||||||  |||| ||| | || || | ||  |||||||||||| |||||| | ||||||| ||   |||    
T  12445069 tggtttgtgggtatttggagaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcg 12445168  T
Q  271 tcttggac 278  Q
    ||||||||    
T  12445169 tcttggac 12445176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 21015998 - 21016062
Alignment:
Q  34 ggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgattt 98  Q
    |||||||||||||||||||||| | || ||||||||  || ||  |||||| |||||||||||||    
T  21015998 ggggctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 21016062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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