View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_low_13 (Length: 350)
Name: NF6304_low_13
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 1751969 - 1751681
Alignment:
| Q |
20 |
cttgtaccgttgttgtgacaatcaacaaaacacaccttctaaattgacagaaagacttttgaaacaaagaggtcattcacatcgagtcaagaacaaccac |
119 |
Q |
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| T |
1751969 |
cttgtaccgttgttgtgacaatcaacaaaacacaccttctaaattgacataaagactttcgaaacaaagaggtcattcacatcgaatcaagaacaaccac |
1751870 |
T |
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| Q |
120 |
acaaatgagttcgataccacatcattaatccaaaaccgaaagacattgtgtttatagattatcttacttaaaaaataccaataaaacttctaatttacat |
219 |
Q |
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| T |
1751869 |
acaaatgagttcgataccacatcattaatccaaaaccgaaagacagtgtgtttatagattctcttacttagaaaataccaataaaacttctaatttacat |
1751770 |
T |
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| Q |
220 |
ttggtacacaacatagatttcaaaacttatatagcaatttcttatggaaccctttaactcgtaacattggttcattgctattatatata |
308 |
Q |
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| T |
1751769 |
ttggtacacaacatagatttcaaaacttatatagcaatttcttatggaaccctttaactcgtaacattggttcattgctattatatata |
1751681 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 20848458 - 20848414
Alignment:
| Q |
107 |
caagaacaaccacacaaatgagttcgataccacatcattaatcca |
151 |
Q |
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| T |
20848458 |
caagaacaaccacacaaatgagtttgacaccacatttttaatcca |
20848414 |
T |
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