View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6304_low_16 (Length: 297)

Name: NF6304_low_16
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6304_low_16
NF6304_low_16
[»] chr3 (11 HSPs)
chr3 (18-289)||(11125560-11125831)
chr3 (99-161)||(8870424-8870486)
chr3 (235-284)||(8870202-8870251)
chr3 (91-142)||(11141358-11141409)
chr3 (235-284)||(11141537-11141586)
chr3 (183-223)||(11142870-11142910)
chr3 (180-223)||(10895356-10895399)
chr3 (190-236)||(8870322-8870368)
chr3 (242-284)||(10895276-10895318)
chr3 (42-75)||(11141308-11141341)
chr3 (183-223)||(8867647-8867687)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 11125560 - 11125831
Alignment:
Q  18 aaacggataagtacatttgaccatcccacttgtttctatcatgtttccaacgtgacaannnnnnnnnnnnnnngaagtttctatacatgaacatgcctat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||    
T  11125560 aaacggataagtacatttgaccatcccacttgtttctatcatgtttccaacgtgacaattttttctgttttttgaagtttctatacatgaacatgcctat 11125659  T
Q  118 ataagccaagaactcgtctcttatgtctctcaaaatcaattaatatatacaaacttgtttgttagcttagccaaacaaaccaatcccattctttgaattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  11125660 ataagccaagaactcgtctcttatgtctctcaaaatcaattaatatatacaaacttgcttgttagcttagccaaacaaaccaatcccactctttgaattt 11125759  T
Q  218 tagttgctaacaactctttcaaactatcaatggtagtagaaaaatttgcaaaactattatttaagaataatc 289  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  11125760 tagttgctaacaactctttcaaactatcaatggtagtagacaaatttgcaaaactcttatttaagaagaatc 11125831  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 8870486 - 8870424
Alignment:
Q  99 tatacatgaacatgcctatataagccaagaactcgtctcttatgtctctcaaaatcaattaat 161  Q
    |||||||||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||||    
T  8870486 tatacatgaagatgcctatataagccatgaactcatctcttatgcctcttaaaatcaattaat 8870424  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 8870251 - 8870202
Alignment:
Q  235 ttcaaactatcaatggtagtagaaaaatttgcaaaactattatttaagaa 284  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  8870251 ttcaaactatcaatggtagtagacaaatttgcaaaactcttatttaagaa 8870202  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 11141358 - 11141409
Alignment:
Q  91 gaagtttctatacatgaacatgcctatataagccaagaactcgtctcttatg 142  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |||||||||    
T  11141358 gaagtttctatgcatgaacatgcctatataagccatgaactcatctcttatg 11141409  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 11141537 - 11141586
Alignment:
Q  235 ttcaaactatcaatggtagtagaaaaatttgcaaaactattatttaagaa 284  Q
    ||||||||||||||||||||||| |||||||||||| | |||||||||||    
T  11141537 ttcaaactatcaatggtagtagagaaatttgcaaaattcttatttaagaa 11141586  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 11142870 - 11142910
Alignment:
Q  183 cttagccaaacaaaccaatcccattctttgaattttagttg 223  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  11142870 cttagccaaacaaaccaataccactctttgaattttagttg 11142910  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 10895399 - 10895356
Alignment:
Q  180 tagcttagccaaacaaaccaatcccattctttgaattttagttg 223  Q
    |||||||||||||||||||||| ||| ||||| |||||||||||    
T  10895399 tagcttagccaaacaaaccaataccactctttcaattttagttg 10895356  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 8870368 - 8870322
Alignment:
Q  190 aaacaaaccaatcccattctttgaattttagttgctaacaactcttt 236  Q
    ||||||||||| |||| |||||||||||||||| | |||||||||||    
T  8870368 aaacaaaccaaccccactctttgaattttagttaccaacaactcttt 8870322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 10895318 - 10895276
Alignment:
Q  242 tatcaatggtagtagaaaaatttgcaaaactattatttaagaa 284  Q
    |||||||||||||||| |||||||||||||| ||||| |||||    
T  10895318 tatcaatggtagtagacaaatttgcaaaactcttattcaagaa 10895276  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 11141308 - 11141341
Alignment:
Q  42 cccacttgtttctatcatgtttccaacgtgacaa 75  Q
    |||||||||||||||||||||| |||||||||||    
T  11141308 cccacttgtttctatcatgttttcaacgtgacaa 11141341  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 8867687 - 8867647
Alignment:
Q  183 cttagccaaacaaaccaatcccattctttgaattttagttg 223  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  8867687 cttagccaaacaaaccaataccactttttgaattttagttg 8867647  T

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