View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6304_low_2 (Length: 548)
Name: NF6304_low_2
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 189 - 539
Target Start/End: Original strand, 30838606 - 30838958
Alignment:
| Q |
189 |
cgaaacaatactattgatatgattacgaggacaccattattttaaattgtctaagacaaaaatattcagggtcgactctaatgctaaatatgattataat |
288 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30838606 |
cgaaacaatactattaatatgattacgaggacaccattattttaaattgtctaagacaaaaaaattcagggtcgactctaatgctaaatatgattataat |
30838705 |
T |
|
| Q |
289 |
aaaaacaaagttatttaattatttcttttttattaacaaaattgaaaa--aatgcaatagtgtcacacatgataattttattttagcctcttatcaaatt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30838706 |
aaaaacaaagttatttaattatttcttttttattaacaaaattgaaaaaaaatgcaatagtgtcacacatgataattttattttagcctcttatcaaatt |
30838805 |
T |
|
| Q |
387 |
tcgtgtagttaaagaatgtgtgtgattgaatcaaacaataaattaattcaagtaataaagaatttgaatcttgtaagtaagtagtcataagttcgaagat |
486 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30838806 |
ttgtgtagttaaagaatgtgtgtgattgaatcaaacaataaattaattcaagtaataaagaatttgaatcttgtaagtaagtagtcataagttcgaagat |
30838905 |
T |
|
| Q |
487 |
agaaatctcatcctaataaaaaagaagaagaaaaatatgtgtgagagtataat |
539 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30838906 |
agaaacctcatcctaataaaaaagaagaagaaaaatatgtgtgagagtataat |
30838958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University