View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_low_22 (Length: 251)
Name: NF6304_low_22
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_low_22 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 2358314 - 2358163
Alignment:
| Q |
100 |
ttttccttctgaaattatacatagccattgattaagaaataaatatggttgagagtgtaagtgatgagatatatacagagtagcattaattcgttttgca |
199 |
Q |
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| T |
2358314 |
ttttccttctgaaattatacatagccattgattaagaaataaatatggttgagagtgtacgtgatgagatatatacagagtagcattaattcgttttgca |
2358215 |
T |
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| Q |
200 |
agtacgtacacaagtatcaaaagaacaaagtagtcgaggacatttcaattat |
251 |
Q |
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| T |
2358214 |
agtacgtacacaagtatcaaaagaaccaagtagtcgaggacatttcaattat |
2358163 |
T |
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Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 2358449 - 2358359
Alignment:
| Q |
13 |
aaaatctataatattaattgttggtatatcatataatgtttgagatatgaatgatatattatagttcttaacagcaatatattctaatttt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2358449 |
aaaatctataatattaattgttggtatatcatataatgttttagatatgaatgatatattatagttcttaacagcaatatattctaatttt |
2358359 |
T |
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