View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6304_low_23 (Length: 246)

Name: NF6304_low_23
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6304_low_23
NF6304_low_23
[»] chr6 (3 HSPs)
chr6 (1-227)||(787094-787320)
chr6 (174-224)||(3074909-3074959)
chr6 (173-227)||(9664749-9664803)
[»] chr1 (2 HSPs)
chr1 (174-227)||(20225608-20225661)
chr1 (175-227)||(20226966-20227018)
[»] chr4 (2 HSPs)
chr4 (174-227)||(55849537-55849590)
chr4 (124-172)||(33722080-33722128)
[»] chr5 (2 HSPs)
chr5 (174-227)||(27172942-27172995)
chr5 (174-227)||(39040654-39040707)
[»] chr2 (1 HSPs)
chr2 (174-227)||(26608124-26608177)
[»] chr3 (6 HSPs)
chr3 (174-225)||(51306330-51306381)
chr3 (174-227)||(20868675-20868729)
chr3 (174-227)||(35610797-35610850)
chr3 (174-227)||(51308791-51308844)
chr3 (174-227)||(24595209-24595258)
chr3 (174-227)||(20871313-20871367)
[»] chr8 (4 HSPs)
chr8 (174-227)||(4676130-4676183)
chr8 (174-227)||(4678075-4678128)
chr8 (169-227)||(12062760-12062819)
chr8 (174-227)||(369263-369316)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 787094 - 787320
Alignment:
Q  1 acaaaatgagggattagtcattttcttgaaaaatgaacaatgagttttgcctattctgagaaaaggaagaaaaagctggaagaactaaacaacaatgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787094 acaaaatgagggattagtcattttcttgaaaaatgaacaatgagttttgcctattctgagaaaaggaagaaaaagctggaagaactaaacaacaatgtaa 787193  T
Q  101 taaactaccaataaatttatgaaatgaaacacaataacatcttagaaagtggaatattaattgaaacagtaaatattaagaataatgatataggtagtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787194 taaactaccaataaatttatgaaatgaaacacaataacatcttagaaagtggaatattaattgaaacagtaaatattaagaataatgatataggtagtta 787293  T
Q  201 ggacactagtttagttactatataagt 227  Q
    |||||||||||||||||||||||||||    
T  787294 ggacactagtttagttactatataagt 787320  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 3074909 - 3074959
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatata 224  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3074909 tattaagaataatgatatagttagttaggacactagtttagttactatata 3074959  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 9664803 - 9664749
Alignment:
Q  173 atattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||    
T  9664803 atattaagaatgatgatatagttaattaggacactagtttagttactatataagt 9664749  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 20225661 - 20225608
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20225661 tattaagaataatgatatagttagttaggacactagtttagttactatataagt 20225608  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 20227018 - 20226966
Alignment:
Q  175 attaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  20227018 attaagaataatgatatagttagctaggacactagtttagttactatataagt 20226966  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 55849590 - 55849537
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  55849590 tattaagaataatgatatagttagttaggacactagttcagttactatataagt 55849537  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 33722080 - 33722128
Alignment:
Q  124 atgaaacacaataacatcttagaaagtggaatattaattgaaacagtaa 172  Q
    |||||||||| ||||| |||| |||||||||||| ||||||||||||||    
T  33722080 atgaaacacactaacagcttacaaagtggaatatcaattgaaacagtaa 33722128  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 27172995 - 27172942
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  27172995 tattaagaataatgatatagtaagttaggatactagtttagttactatataagt 27172942  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 39040707 - 39040654
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    |||||||||||||||||||| |||||||   |||||||||||||||||||||||    
T  39040707 tattaagaataatgatatagttagttagagtactagtttagttactatataagt 39040654  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 26608177 - 26608124
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||    
T  26608177 tattaagaataatgatatagttagttaggatactagttcagttactatataagt 26608124  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 51306330 - 51306381
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataa 225  Q
    |||||||||||||||||||| || ||||||||||||| ||||||||||||||    
T  51306330 tattaagaataatgatatagttaattaggacactagtgtagttactatataa 51306381  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 20868675 - 20868729
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactag-tttagttactatataagt 227  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  20868675 tattaagaataatgatatagttagttaggatactagttttagttactatataagt 20868729  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 35610797 - 35610850
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    ||||||||||||| |||||| ||||||||  |||||||||||||||||||||||    
T  35610797 tattaagaataataatatagttagttagggtactagtttagttactatataagt 35610850  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 51308791 - 51308844
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    |||||||||||||||||||| || ||||||| ||||| ||||||||||||||||    
T  51308791 tattaagaataatgatatagttaattaggacgctagtgtagttactatataagt 51308844  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 24595209 - 24595258
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  24595209 tattaagaataatgatatag----ttaggacactagtttagttactatataagt 24595258  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 20871313 - 20871367
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagttt-agttactatataagt 227  Q
    |||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||    
T  20871313 tattaagaatgatgatatagttagttaggatactagttttagttactatataagt 20871367  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 4676130 - 4676183
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    |||||||||||||||||||| |||||||   |||||||||||||||||||||||    
T  4676130 tattaagaataatgatatagttagttagagtactagtttagttactatataagt 4676183  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 4678075 - 4678128
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    |||||||||||||||||||| |||||||   |||||||||||||||||||||||    
T  4678075 tattaagaataatgatatagttagttagagtactagtttagttactatataagt 4678128  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 12062760 - 12062819
Alignment:
Q  169 gtaaatattaagaataatgatataggtagttaggacactag-tttagttactatataagt 227  Q
    |||| |||||||||||||||||||| |||||| || ||||| ||||||||||||||||||    
T  12062760 gtaactattaagaataatgatatagttagttaagatactagttttagttactatataagt 12062819  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 369263 - 369316
Alignment:
Q  174 tattaagaataatgatataggtagttaggacactagtttagttactatataagt 227  Q
    ||||||||||||| |||||| ||||||| | | |||||||||||||| ||||||    
T  369263 tattaagaataataatatagttagttagaatagtagtttagttactaaataagt 369316  T

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