View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6304_low_3 (Length: 518)
Name: NF6304_low_3
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 7414183 - 7414682
Alignment:
| Q |
1 |
aatatcagacccgggacacctatgattaccaatcgatcaacacaaatataaaaaccaagattggcttcaacttagatattacttgtgcaaaaggccaata |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7414183 |
aatatcaaacccgggacacctatgattaccaatcgatcaacacaaatataaaaaccaagattggcttcaacttacatattacttgtgcaaaaggccaata |
7414282 |
T |
|
| Q |
101 |
gctactaagttcgtgtcaagttcttcttctgcgcgtacacaatgcaaaacaaacatgttagagtttgcaatataattaacatgttgtatgtgttgttgta |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7414283 |
gctactaagtttgtgtcaagttcttcttctgcgcgtacacaatgcaaaacaaacatgttagagtttgcaatataattaacatgttgtatgtgttgttgta |
7414382 |
T |
|
| Q |
201 |
tttgacttcactgagaaaaatttcaatttcttttgcaacattcattagtatagatggtaatagaagaacaacgatacactttgcatgaactaaaagttta |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7414383 |
tttgacttcactgagaaaattttcaatttcttttgcaacattcattagtatagatggtaatagaagaacaacgatacactttgcatgaactaaaagttta |
7414482 |
T |
|
| Q |
301 |
tgaattgatgaaaaatcacacaccaaactaaactaaaccaatcacacatacacaaattaatcatccaaagtcaaagcgnnnnnnnttatctcccactctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7414483 |
tgaattgatgaaaaatcacacaccaaactaaactaaaccaatcacacatacacaaattaatcatccaaagtcaaagcgaaaaaaattatctcccactctt |
7414582 |
T |
|
| Q |
401 |
ctataccatgattatatacccccaaccctttccaaatgtagtcaacaaaaaacaaaccaacatcataatcatataatgagtaattaaatcccccagcttc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7414583 |
ctataccatgattatatacccccaaccctttccaaatgtagtcaacaaaaaacaaaccaacatcataatcatataatgagtaattaaatcccccagcttc |
7414682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 29274989 - 29274936
Alignment:
| Q |
274 |
atacactttgcatgaactaaaagtttatgaattgatgaaaaatcacacaccaaa |
327 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||| ||||||||||| |
|
|
| T |
29274989 |
atacactttgcatgaactaaaagtttcttaatagatgaaaaaccacacaccaaa |
29274936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 55859609 - 55859662
Alignment:
| Q |
274 |
atacactttgcatgaactaaaagtttatgaattgatgaaaaatcacacaccaaa |
327 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||| ||||||||||| |
|
|
| T |
55859609 |
atacactttgcatgaactaaaagtttcttaatagatgaaaaaccacacaccaaa |
55859662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 35204017 - 35203964
Alignment:
| Q |
274 |
atacactttgcatgaactaaaagtttatgaattgatgaaaaatcacacaccaaa |
327 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||| ||||||||| ||||||||||| |
|
|
| T |
35204017 |
atacactttgcatgaactaaaactttcttaatagatgaaaaaccacacaccaaa |
35203964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 3822414 - 3822367
Alignment:
| Q |
280 |
tttgcatgaactaaaagtttatgaattgatgaaaaatcacacaccaaa |
327 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||| ||||||||||| |
|
|
| T |
3822414 |
tttgcatgaactaaaagtttcttaatagatgaaaaaccacacaccaaa |
3822367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University