View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6304_low_30 (Length: 214)
Name: NF6304_low_30
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6304_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 30464183 - 30463983
Alignment:
| Q |
1 |
ttaacaatggattcacaaccacagattcatctcttttactcgctatctcttccgagccttgacccgaacaacttgttttatcctcataatctttctttga |
100 |
Q |
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| T |
30464183 |
ttaacaatggattcacaaccacagattcatctcttttactcgctatctcttccgagccttgacccgaacaacttgttttatcctcataatctttctttga |
30464084 |
T |
|
| Q |
101 |
attcttctcttctactttgctgtcgttgttctccaatgacgccgatgaatttatctctgattcctcgccgttagcgctaacggagaactcagcaaacatc |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30464083 |
attcttctcttctactttgct---gttgttctccaatgacgccgacgaattcatctctgattcctcgccgttagcgctaacggagaactcagcaaacatc |
30463987 |
T |
|
| Q |
201 |
tctg |
204 |
Q |
| |
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|||| |
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| T |
30463986 |
tctg |
30463983 |
T |
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