View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6304_low_7 (Length: 441)

Name: NF6304_low_7
Description: NF6304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6304_low_7
NF6304_low_7
[»] chr4 (4 HSPs)
chr4 (238-431)||(55331017-55331210)
chr4 (18-186)||(55330797-55330965)
chr4 (18-186)||(55336235-55336403)
chr4 (235-337)||(55336449-55336551)
[»] chr2 (17 HSPs)
chr2 (19-174)||(8431130-8431285)
chr2 (22-182)||(8395535-8395695)
chr2 (22-182)||(8405877-8406037)
chr2 (22-182)||(8375852-8376012)
chr2 (22-182)||(8439091-8439251)
chr2 (25-111)||(8411997-8412083)
chr2 (25-111)||(8417215-8417301)
chr2 (25-111)||(8434095-8434181)
chr2 (260-431)||(8395298-8395469)
chr2 (260-431)||(8406103-8406274)
chr2 (22-111)||(8417075-8417164)
chr2 (54-182)||(8403950-8404078)
chr2 (250-312)||(8368479-8368541)
chr2 (250-312)||(8400869-8400931)
chr2 (289-335)||(8404185-8404231)
chr2 (250-312)||(8422446-8422508)
chr2 (237-338)||(8439297-8439398)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 238 - 431
Target Start/End: Original strand, 55331017 - 55331210
Alignment:
Q  238 ggccaccaaacggcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 337  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331017 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 55331116  T
Q  338 tgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttct 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331117 tgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttct 55331210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 55330797 - 55330965
Alignment:
Q  18 acctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttcaatatct 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330797 acctatagctgcaattccagtgagtaatggaccagcagttgctaaactcttattaacctttaatgctatatttccaagtctttcataatcttcaatatct 55330896  T
Q  118 ttctttttcacaacttcaataacttctctcaattccttttctaattcctcactccatccattattacta 186  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330897 ttcattttcacaacttcaataacttctctcaattccttttctaattcctcactccatccattattacta 55330965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 55336235 - 55336403
Alignment:
Q  18 acctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttcaatatct 117  Q
    |||||| |||||||||||||||||||||||||| || ||||| | ||||||||||| ||| |||||||||||||||||||| ||||| |||||||| |||    
T  55336235 acctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtct 55336334  T
Q  118 ttctttttcacaacttcaataacttctctcaattccttttctaattcctcactccatccattattacta 186  Q
    ||  | || ||||||||||||||||| |||| |||| |||||||||| |||||||||||||| ||||||    
T  55336335 ttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatccatttttacta 55336403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 55336449 - 55336551
Alignment:
Q  235 gcaggccaccaaacggcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttct 334  Q
    |||||||||||||| | ||||| ||||||||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||||||| |||||||    
T  55336449 gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttct 55336548  T
Q  335 cca 337  Q
    |||    
T  55336549 cca 55336551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 8431130 - 8431285
Alignment:
Q  19 cctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttcaatatctt 118  Q
    ||||||||||||||||| | ||||||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||  ||||    
T  8431130 cctatagctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatcttcaacgtctt 8431229  T
Q  119 tctttttcacaacttcaataacttctctcaattccttttctaattcctcactccat 174  Q
    |  | || |  ||||||| ||| || |||| |||| |||||||||| |||||||||    
T  8431230 ttctctttatcacttcaacaacatccctcatttccatttctaattcttcactccat 8431285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 8395695 - 8395535
Alignment:
Q  22 atagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttcaatatctttct 121  Q
    |||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||| ||||||||||||   |||||      
T  8395695 atagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttc 8395596  T
Q  122 ttttcacaacttcaataacttctctcaattccttttctaattcctcactccatccattatt 182  Q
     ||| || || |||| |||||| |||| |||| |||| ||||| |||||||||||||||||    
T  8395595 gttttaccacgtcaacaacttccctcatttccatttccaattcttcactccatccattatt 8395535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 8405877 - 8406037
Alignment:
Q  22 atagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttcaatatctttct 121  Q
    |||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||| ||||||||||||   |||||      
T  8405877 atagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttc 8405976  T
Q  122 ttttcacaacttcaataacttctctcaattccttttctaattcctcactccatccattatt 182  Q
     ||| || || |||| |||||| |||| |||| |||| ||||| |||||||||||||||||    
T  8405977 gttttaccacgtcaacaacttccctcatttccatttccaattcttcactccatccattatt 8406037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 8376012 - 8375852
Alignment:
Q  22 atagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttcaatatctttct 121  Q
    |||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||   |||||      
T  8376012 atagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttc 8375913  T
Q  122 ttttcacaacttcaataacttctctcaattccttttctaattcctcactccatccattatt 182  Q
    | || |  ||||||| |||||| |||| |||| |||| ||||| | |||||| ||||||||    
T  8375912 tctttatcacttcaacaacttccctcatttccatttccaattctttactccacccattatt 8375852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 8439091 - 8439251
Alignment:
Q  22 atagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttcaatatctttct 121  Q
    |||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||   |||||      
T  8439091 atagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttc 8439190  T
Q  122 ttttcacaacttcaataacttctctcaattccttttctaattcctcactccatccattatt 182  Q
    | || |  ||||||| |||||| |||| |||| |||| ||||| | |||||| ||||||||    
T  8439191 tctttatcacttcaacaacttccctcatttccatttccaattctttactccacccattatt 8439251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 8411997 - 8412083
Alignment:
Q  25 gctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttca 111  Q
    ||||||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||| ||||||||||||    
T  8411997 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttca 8412083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 8417215 - 8417301
Alignment:
Q  25 gctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttca 111  Q
    ||||||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||| ||||||||||||    
T  8417215 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttca 8417301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 8434095 - 8434181
Alignment:
Q  25 gctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttca 111  Q
    ||||||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||| ||||||||||||    
T  8434095 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttca 8434181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 431
Target Start/End: Complemental strand, 8395469 - 8395298
Alignment:
Q  260 attttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctccatgaaacacttcacatcttgttc 359  Q
    ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||||   || ||| |||||||  ||    
T  8395469 attttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttccattgcacccttaacatcttcctc 8395370  T
Q  360 tgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttct 431  Q
      |  ||||||||||||| | |||  |||  || | |||| |||| |||||||| ||||||||||| |||||    
T  8395369 actaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttct 8395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 431
Target Start/End: Original strand, 8406103 - 8406274
Alignment:
Q  260 attttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctccatgaaacacttcacatcttgttc 359  Q
    ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||||   || ||| |||||||  ||    
T  8406103 attttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttccattgcacccttaacatcttcctc 8406202  T
Q  360 tgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttct 431  Q
      |  ||||||||||||| | |||  |||  || | |||| |||| |||||||| ||||||||||| |||||    
T  8406203 actaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttct 8406274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 8417075 - 8417164
Alignment:
Q  22 atagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttca 111  Q
    ||||| |||||||| ||||||||||| || |||||||||||||||||||  ||||| || ||||| |||||||| || | ||||||||||    
T  8417075 atagcggcaattcctgtgagtaatggccctgcaattgctaaactcttgtctaccttcaaagctatgtttccaagcctgttataatcttca 8417164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 8403950 - 8404078
Alignment:
Q  54 aattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttcaatatctttctttttcacaacttcaataacttctctcaattcc 153  Q
    |||||||||||||||||||| ||||||||| ||||| || | ||| |||||||| |||||||||||  | ||||| |||||||| || ||  ||| |||     
T  8403950 aattgctaaactcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaattacctccttcatttca 8404049  T
Q  154 ttttctaattcctcactccatccattatt 182  Q
    ||||| || |||  | |||||||||||||    
T  8404050 ttttccaactccaaattccatccattatt 8404078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 8368479 - 8368541
Alignment:
Q  250 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 312  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8368479 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8368541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 8400931 - 8400869
Alignment:
Q  250 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 312  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8400931 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8400869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 8404185 - 8404231
Alignment:
Q  289 cctaataaaggaagtggataagctttgtcaagtgccaaaactttctc 335  Q
    |||||||||||||||||||| ||||| ||||| |||||||| |||||    
T  8404185 cctaataaaggaagtggataggctttatcaagagccaaaaccttctc 8404231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 8422508 - 8422446
Alignment:
Q  250 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 312  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8422508 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8422446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 8439297 - 8439398
Alignment:
Q  237 aggccaccaaacggcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 336  Q
    ||||||||||   ||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||||||||||||| || |||    
T  8439297 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc 8439396  T
Q  337 at 338  Q
    ||    
T  8439397 at 8439398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University