View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6305_high_2 (Length: 402)
Name: NF6305_high_2
Description: NF6305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6305_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 6271334 - 6271703
Alignment:
| Q |
19 |
ggagcagctgagggcaaagatttggggacacataatgggaaatggaagtttcaataccaattatgttgttcctcaatggaagctgcaatatgaatgcagc |
118 |
Q |
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| T |
6271334 |
ggagcagctgagggcaaagatttggggacacataatgggaaatggaagtttcaataccaattatgttgttcctcaatggaagctgcaatatgaatgcagc |
6271433 |
T |
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| Q |
119 |
gggagccaacctcaaatccttgttattctggatgatgtgtggtcaccttctgtgctggagcagcttgtgtttagaatgcctaattgcaagttcattgtgg |
218 |
Q |
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| T |
6271434 |
gggagccaacctcaaatccttgttattctggatgatgtgtggtcaccttctgtgctggagcagcttgtgtttagaatgcctaattgcaagttcattgtgg |
6271533 |
T |
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| Q |
219 |
tttccaggttcatattccccatttttaatgcaacttataaagttgaattgttggacaaagatgatgcactgtctttgttctgtcaccacgctttcggaca |
318 |
Q |
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| T |
6271534 |
tttccaggttcatattccccatttttaatgcaacttataaagttgaattgttggacaaagatgatgcactgtctttgttctgtcaccacgctttcggaca |
6271633 |
T |
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| Q |
319 |
gaaatcaattcctttcgcagctaatcagaatttagtcaaacaggtaatggtttcatctttgaagttgtga |
388 |
Q |
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| T |
6271634 |
gaaatcaattcctttcgcagctaatcagaatttagtcaaacaggtaatggtttcatctttgaagttgtga |
6271703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 6262234 - 6262583
Alignment:
| Q |
19 |
ggagcagctgagggcaaagatttggggacacataatgggaaatggaagtttcaataccaattatgttgttcctcaatggaagctgcaatatgaatgcagc |
118 |
Q |
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| T |
6262234 |
ggagcagctcaggtcaaaaatttggggacacataatgggaaacagaaatttgaatccaaattatgttgttcctcggtggataccacaatttgaatgcaga |
6262333 |
T |
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| Q |
119 |
gggagccaacctcaaatccttgttattctggatgatgtgtggtcaccttctgtgctggagcagcttgtgtttagaatgcctaattgcaagttcattgtgg |
218 |
Q |
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|| || || || | | ||| |||| |||||||| ||||||| | || || || |||||||||| |||||| || ||||||||| |||| | |
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| T |
6262334 |
---agtgaagctagaaccttggttgttctagatgatgtttggtcacaagcagttcttgaacagcttgtgtgtagaataccaggttgcaagtttgttgttg |
6262430 |
T |
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| Q |
219 |
tttccaggttcatattcccca---tttttaatgcaacttataaagttgaattgttggacaaagatgatgcactgtctttgttctgtcaccacgctttcgg |
315 |
Q |
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| T |
6262431 |
tttccaggttccaattcccaacaatattctctgcaacttataaggttgaattgctcagtgaagaggatgctctgtcattattctgtcaccatgcttttgg |
6262530 |
T |
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| Q |
316 |
acagaaatcaattcctttcgcagctaatcagaatttagtcaaacaggtaatgg |
368 |
Q |
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| T |
6262531 |
acagaaatcaatccctttaacagctaatgagaatttggtcaaacaggtaatgg |
6262583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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