View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6305_high_4 (Length: 323)
Name: NF6305_high_4
Description: NF6305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6305_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 306
Target Start/End: Complemental strand, 5267514 - 5267230
Alignment:
| Q |
23 |
tattattaatggaaccaagtaccttttttatcatgatagaaaatatatttatttccatttcttcaaatctctcaacaagtaactataaaaagaggtcatg |
122 |
Q |
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| T |
5267514 |
tattattaatggaaccaagtaccttttttatcatgataaaaaatatatttatttccatttcttcaaatctcttaacaagtaactataaaaagaggtcatg |
5267415 |
T |
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| Q |
123 |
cctttaagcataacatgatgcttaaaccaaatttcacaatcaatcctaagaagatcatacataaatatggaacgaaaataacccccaagcagacattgct |
222 |
Q |
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| T |
5267414 |
cctttaagcataacatgatgcttaaaccaaatttcacaatcaatcctaagaagatcatacataaatatgaaacgaaaataacccccaagcagacattgct |
5267315 |
T |
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| Q |
223 |
a-agtgttacttgcaaaactaccattagtcatgttggccatctgcttagacaattgtccaatatgagtttcaaaattctttatag |
306 |
Q |
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| T |
5267314 |
atagtgttacttgcaaaactaccattagtcatgttgcccatctgcttagacaattgtccaatatgagtttcaaagttctttatag |
5267230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 34536502 - 34536423
Alignment:
| Q |
74 |
tttccatttcttcaaatctctcaacaagtaactataaaaagaggtcatgcctttaagcataacatgatgcttaaaccaaat |
154 |
Q |
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| T |
34536502 |
tttctatttctccatatctcgcaacaagtgactatgaaaagaggtcatg-tgttaagcatagcatgatgtttgaaccaaat |
34536423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 55883578 - 55883653
Alignment:
| Q |
88 |
aatctctcaacaagtaactataaaaagaggtcatgcctttaagcataacatgatgcttaaaccaaatttcacaatca |
164 |
Q |
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| T |
55883578 |
aatctcccaacaagtaactacgaaaagaggtcatg-tgttaagcataacatgatgtttgaatcaaatttgacaatca |
55883653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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