View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6305_low_1 (Length: 503)
Name: NF6305_low_1
Description: NF6305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6305_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Original strand, 5058607 - 5059087
Alignment:
| Q |
10 |
caatgagcttcaatcaagggagcaaagatgtt---atggatccatctcttactacaagttttcatcaaaagattcgactcctttctggttcgtcgttacc |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5058607 |
caatgagcttcaatcaagggagcaaagatgttgttatggatccatctcttactacaagttttcatcaaaagattcgactcctttctggttcgtcattacc |
5058706 |
T |
|
| Q |
107 |
acaattgttaccaccatgtgttccatcattcatgcatagatctatatcagcttcttctgttgaacaaatggcacaatctaatggtcctaaaaatcattac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5058707 |
acaattgttaccaccatgtgttccatcattcatgcatagatctatatcagcttcttctgttgaacaaatggcacaatctaatggtcctaaaaatcattac |
5058806 |
T |
|
| Q |
207 |
tcatctgcagaactcaattcaaccatactgtaccaaagtccatctaacatgtccactcagataagtcatgtaatggcaagaaatttttcaccttatcaat |
306 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5058807 |
tcatcggcagaactcaattcaaccatactgtaccaaagtccatctaacatgtccactcagataagtcatgtaatggcaagaaatttttcaccttaccaat |
5058906 |
T |
|
| Q |
307 |
cattggaagataataaagaactacaaataagtatagctaatagtccatccaagagaatgaaaagagatgaacttcctttgtttccgttggcaccgacgtt |
406 |
Q |
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| T |
5058907 |
cattggaagataataaagaactacaaataagtatagctaatagtccatccaagagaatgaaaagagatgaacttcctttgtttccgttggcaccgacgtt |
5059006 |
T |
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| Q |
407 |
ttggtcatcaccagatcgcgactcaattgatgaacaccaggaacatcactcaagagtaatcaaagctcttcctcataatcc |
487 |
Q |
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| T |
5059007 |
ttggtcatcaccagatcgcgactcaattgatgaacaccaggaacatcactcaagagtaatcaaagctcttcctcataatcc |
5059087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 5198196 - 5198310
Alignment:
| Q |
300 |
tatcaatcattggaagataataaagaactacaaataagtatagctaatagtccatccaagagaatgaaaagagatgaacttcctttgtttccgttggcac |
399 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||| | | | ||| || |||| ||||||||||| |||||||||||||| |||| |||||| |
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| T |
5198196 |
tatcgatcattggaagataataaagaactgcaaataagcaaatccaatggttcatcaaagagaatgaatgaggatgaacttcctttagttccagtggcac |
5198295 |
T |
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| Q |
400 |
cgacgttttggtcat |
414 |
Q |
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| T |
5198296 |
tgacgttttggtcat |
5198310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 1795549 - 1795598
Alignment:
| Q |
299 |
ttatcaatcattggaagataataaagaactacaaataagtatagctaata |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
1795549 |
ttatcaatcattggaagataataaagaactacaaataagtaaagccaata |
1795598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 5185457 - 5185408
Alignment:
| Q |
299 |
ttatcaatcattggaagataataaagaactacaaataagtatagctaata |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
5185457 |
ttatcaatcattggaagataataaagaactacaaataagtaaagccaata |
5185408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 6231970 - 6231921
Alignment:
| Q |
299 |
ttatcaatcattggaagataataaagaactacaaataagtatagctaata |
348 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| ||| |||| |
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|
| T |
6231970 |
ttatcaatcattggaagataataaataactacaaataagtaaagccaata |
6231921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 5178437 - 5178377
Alignment:
| Q |
142 |
atagatctatatcagcttcttctgttgaacaaatggcacaatctaatggtcctaaaaatca |
202 |
Q |
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| T |
5178437 |
atagatctatatcggcttccgcagttgagcaaatgaaacaatctaattgtcctaaaaatca |
5178377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 5179147 - 5179098
Alignment:
| Q |
299 |
ttatcaatcattggaagataataaagaactacaaataagtatagctaata |
348 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||||| ||| |||| |
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| T |
5179147 |
ttatcaatcattggaagataataaagaacgactaataagtaaagccaata |
5179098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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