View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6305_low_3 (Length: 395)

Name: NF6305_low_3
Description: NF6305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6305_low_3
NF6305_low_3
[»] chr8 (7 HSPs)
chr8 (18-389)||(43812330-43812701)
chr8 (212-389)||(43801955-43802132)
chr8 (144-190)||(9928182-9928228)
chr8 (142-190)||(11188251-11188299)
chr8 (142-185)||(32506988-32507031)
chr8 (142-188)||(14482130-14482176)
chr8 (142-188)||(40728514-40728560)
[»] chr6 (9 HSPs)
chr6 (140-188)||(5554859-5554907)
chr6 (142-187)||(24836295-24836340)
chr6 (139-196)||(32861348-32861405)
chr6 (143-187)||(33116534-33116578)
chr6 (142-188)||(32975906-32975952)
chr6 (142-187)||(33911377-33911422)
chr6 (142-182)||(507154-507194)
chr6 (140-188)||(2023723-2023771)
chr6 (140-188)||(31668779-31668827)
[»] chr4 (6 HSPs)
chr4 (62-188)||(41050624-41050751)
chr4 (142-188)||(47970246-47970292)
chr4 (142-184)||(51044555-51044597)
chr4 (143-188)||(4191667-4191712)
chr4 (142-187)||(24936239-24936284)
chr4 (142-187)||(28623218-28623263)
[»] chr5 (3 HSPs)
chr5 (142-188)||(35135758-35135804)
chr5 (144-185)||(38033899-38033940)
chr5 (144-188)||(18704133-18704177)
[»] chr3 (6 HSPs)
chr3 (142-188)||(36519127-36519173)
chr3 (142-188)||(16790184-16790230)
chr3 (142-184)||(24605112-24605154)
chr3 (142-187)||(20173984-20174029)
chr3 (134-166)||(32095279-32095311)
chr3 (139-175)||(36887463-36887499)
[»] chr2 (6 HSPs)
chr2 (139-185)||(10143103-10143149)
chr2 (142-187)||(10150684-10150729)
chr2 (142-185)||(34054997-34055040)
chr2 (142-188)||(13864578-13864624)
chr2 (142-184)||(38239647-38239689)
chr2 (144-188)||(43431542-43431586)
[»] chr1 (6 HSPs)
chr1 (142-188)||(16982032-16982078)
chr1 (142-184)||(27140417-27140459)
chr1 (139-188)||(870973-871022)
chr1 (142-183)||(15360827-15360868)
chr1 (144-188)||(4202227-4202271)
chr1 (144-188)||(13037792-13037836)
[»] chr7 (7 HSPs)
chr7 (142-186)||(2013129-2013173)
chr7 (132-188)||(44241788-44241844)
chr7 (144-186)||(2223078-2223120)
chr7 (142-187)||(4591471-4591516)
chr7 (142-183)||(35809000-35809041)
chr7 (142-182)||(2727456-2727496)
chr7 (143-187)||(27481391-27481435)
[»] scaffold0590 (1 HSPs)
scaffold0590 (142-188)||(1170-1216)
[»] scaffold0275 (1 HSPs)
scaffold0275 (142-188)||(2759-2805)
[»] scaffold0100 (1 HSPs)
scaffold0100 (142-188)||(42545-42591)
[»] scaffold0508 (1 HSPs)
scaffold0508 (139-188)||(9868-9917)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 43812330 - 43812701
Alignment:
Q  18 atttaaggacataatagtttatcgaaacgacttatgataggtcgataagctgtttttagcttatttccgtgaccttcccgaatagcttttgaaaacacct 117  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43812330 atttaagggcataatagtttatcgaaacgacttatgataggtccataagctgtttttagcttatttccgtgaccttcccgaatagcttttgaaaacacct 43812429  T
Q  118 tatagcataaaagcagttaaattaattttatcttttgttatagaaataaactatacataaacacttatatgctacaacccattaattaacctgcatatcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43812430 tatagcataaaagcagttaaattaattttatcttttgttatagaaataaactatacataaacacttatatgctacaaccaattaattaacctgcatatcc 43812529  T
Q  218 aatcatggcctaaattatttagcttttattgtcagggattaaaaagaaggtacaagaaaactgctaaagcaatggatcaagtgtttgagaagataattaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43812530 aatcatggcctaaattatttagcttttattgtcagggattaaaaagaaggtacaagaaaactgctaaagcaatggatcaagtgtttgagaagataattaa 43812629  T
Q  318 ggaacgtgaacaaagttcacatgtgcaaaatgaagggcagaaacacaaaaacttcatagacattcttctctc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43812630 ggaacgtgaacaaagttcacatgtgcaaaatgaagggcagaaacacaaaaacttcatagacattctactctc 43812701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 212 - 389
Target Start/End: Original strand, 43801955 - 43802132
Alignment:
Q  212 atatccaatcatggcctaaattatttagcttttattgtcagggattaaaaagaaggtacaagaaaactgctaaagcaatggatcaagtgtttgagaagat 311  Q
    ||||||||||||| || ||||||| |||||| |||||||||||||||||||| | |||||||| || || ||||||||| || |||||||| ||||||||    
T  43801955 atatccaatcatgaccgaaattatctagcttgtattgtcagggattaaaaaggaagtacaagagaattggtaaagcaatagaccaagtgttggagaagat 43802054  T
Q  312 aattaaggaacgtgaacaaagttcacatgtgcaaaatgaagggcagaaacacaaaaacttcatagacattcttctctc 389  Q
    ||||||||||| ||||| ||| |||||||||||||  ||||||||||| || ||  ||||| |||||||||| |||||    
T  43802055 aattaaggaacatgaacgaagctcacatgtgcaaagcgaagggcagaagcataaggacttcgtagacattctactctc 43802132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 9928228 - 9928182
Alignment:
Q  144 tttatcttttgttatagaaataaactatacataaacacttatatgct 190  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||    
T  9928228 tttatcttttgttatagaaataacttatacataaacacttatttgct 9928182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 11188251 - 11188299
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatgct 190  Q
    |||||||||||||||||||||| ||  ||||||||| ||||||||||||    
T  11188251 attttatcttttgttatagaaacaacttatacataagcacttatatgct 11188299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 32507031 - 32506988
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttat 185  Q
    ||||||||||||||| |||||||||  |||||||||||||||||    
T  32507031 attttatcttttgttgtagaaataacttatacataaacacttat 32506988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 14482176 - 14482130
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||||||||||||   ||||||||| ||||||||||    
T  14482176 attttatcttttgttatagaaatagtttatacataagcacttatatg 14482130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 40728514 - 40728560
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    |||||||||||||||||||||||||  ||| ||| ||||||||||||    
T  40728514 attttatcttttgttatagaaataacttatgcatgaacacttatatg 40728560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 5554859 - 5554907
Alignment:
Q  140 taattttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  5554859 taattttatcttttgttatagaaataacttatacataaacacgtatatg 5554907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 24836295 - 24836340
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatat 187  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||    
T  24836295 attttatcttttgttatagaaataacttatacataaatacttatat 24836340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 32861405 - 32861348
Alignment:
Q  139 ttaattttatcttttgttatagaaataaactatacataaacacttatatgctacaacc 196  Q
    |||||||||||||||||||||||||||   ||| ||||| ||||||||||||| ||||    
T  32861405 ttaattttatcttttgttatagaaatagcgtatccataagcacttatatgctaaaacc 32861348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 33116578 - 33116534
Alignment:
Q  143 ttttatcttttgttatagaaataaactatacataaacacttatat 187  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||    
T  33116578 ttttatcttttgttaaagaaataacttatacataaacacttatat 33116534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 32975952 - 32975906
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||| |||||||| ||||||||  ||||||||||||||||||||    
T  32975952 attttatattttgttacagaaataacttatacataaacacttatatg 32975906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 33911377 - 33911422
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatat 187  Q
    |||| ||||||||||||| ||||| | |||||||||||||||||||    
T  33911377 atttgatcttttgttataaaaatagattatacataaacacttatat 33911422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 507194 - 507154
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacact 182  Q
    |||||||||||||||||||||||||  ||||||||| ||||    
T  507194 attttatcttttgttatagaaataatttatacataagcact 507154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 2023723 - 2023771
Alignment:
Q  140 taattttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||| |||||||||||  |||| || ||||||||||||    
T  2023723 taattttatcttttgctatagaaataacttatatatgaacacttatatg 2023771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 31668779 - 31668827
Alignment:
Q  140 taattttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||| ||||||||||||||||   ||||||||| ||||||||||    
T  31668779 taattttatgttttgttatagaaatagcttatacataagcacttatatg 31668827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 41050751 - 41050624
Alignment:
Q  62 ataagctgtttttagcttatttccgtgaccttcccgaatagcttttgaaaacaccttatagcataaaagcagttaaa-ttaattttatcttttgttatag 160  Q
    ||||||||||||||||||||||| || |  |  || | ||| || |||||||| |||||| | |||||  ||||||| || |||| ||||||||||||||    
T  41050751 ataagctgtttttagcttatttcggtaagatctccaattagtttatgaaaacagcttataacgtaaaaaaagttaaacttcatttcatcttttgttatag 41050652  T
Q  161 aaataaactatacataaacacttatatg 188  Q
    |||||   ||||||| ||||||||||||    
T  41050651 aaatagtttatacattaacacttatatg 41050624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 47970292 - 47970246
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||||||||||||   ||||||||| ||||||||||    
T  47970292 attttatcttttgttatagaaatagcttatacataagcacttatatg 47970246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 51044555 - 51044597
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacactta 184  Q
    ||||||||||||||||||||||||   ||||||||||||||||    
T  51044555 attttatcttttgttatagaaatagcttatacataaacactta 51044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 4191712 - 4191667
Alignment:
Q  143 ttttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    |||||||||||||||||||||||   ||||||||| ||||||||||    
T  4191712 ttttatcttttgttatagaaatagcttatacataagcacttatatg 4191667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 24936284 - 24936239
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatat 187  Q
    ||||||| |||||||||||||||||  ||||||||| |||||||||    
T  24936284 attttatattttgttatagaaataacttatacataaccacttatat 24936239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 28623263 - 28623218
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatat 187  Q
    |||||||||||||||||| ||||||  ||||||||| |||||||||    
T  28623263 attttatcttttgttatataaataacttatacataagcacttatat 28623218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 35135758 - 35135804
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||    
T  35135758 attttatcttttgttatagaaatatcttatacataaacacttatatg 35135804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 38033940 - 38033899
Alignment:
Q  144 tttatcttttgttatagaaataaactatacataaacacttat 185  Q
    |||||||||||||||| ||||||  |||||||||||||||||    
T  38033940 tttatcttttgttatataaataacttatacataaacacttat 38033899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 18704133 - 18704177
Alignment:
Q  144 tttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    |||||||||||||||||||||||  |||||||||  |||||||||    
T  18704133 tttatcttttgttatagaaataacttatacataagaacttatatg 18704177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 36519173 - 36519127
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||||    
T  36519173 attttatctttagttatagaaataaagtatatataaacacttatatg 36519127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 16790184 - 16790230
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    |||||||||||||||||||||||||  |||| |||| ||||||||||    
T  16790184 attttatcttttgttatagaaataacttatatataagcacttatatg 16790230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 24605112 - 24605154
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacactta 184  Q
    |||| ||||||||||||||||||||  ||||||||||||||||    
T  24605112 atttcatcttttgttatagaaataacttatacataaacactta 24605154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 20173984 - 20174029
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatat 187  Q
    |||||||||||||||||||||||||   |||||||| |||||||||    
T  20173984 attttatcttttgttatagaaataactaatacataagcacttatat 20174029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 32095279 - 32095311
Alignment:
Q  134 ttaaattaattttatcttttgttatagaaataa 166  Q
    |||| ||||||||||||||||||||||||||||    
T  32095279 ttaacttaattttatcttttgttatagaaataa 32095311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 36887499 - 36887463
Alignment:
Q  139 ttaattttatcttttgttatagaaataaactatacat 175  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36887499 ttaattttatcttttgttatagaaataacttatacat 36887463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 10143149 - 10143103
Alignment:
Q  139 ttaattttatcttttgttatagaaataaactatacataaacacttat 185  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||    
T  10143149 ttaattttatcttttgttatagaaataacttatacataagcacttat 10143103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 10150729 - 10150684
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatat 187  Q
    |||||||||||| ||||||||||||  |||||||||||||||||||    
T  10150729 attttatcttttattatagaaataacttatacataaacacttatat 10150684  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 34054997 - 34055040
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttat 185  Q
    ||||||||||||||||||||||||  |||||||||| |||||||    
T  34054997 attttatcttttgttatagaaatagcctatacataagcacttat 34055040  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 13864624 - 13864578
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    |||||| |||||||||||||||||   ||||||||||||||||||||    
T  13864624 attttaccttttgttatagaaatagcttatacataaacacttatatg 13864578  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 38239647 - 38239689
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacactta 184  Q
    ||||||||||||||||||||||||   ||||||||||||||||    
T  38239647 attttatcttttgttatagaaatagcttatacataaacactta 38239689  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 43431542 - 43431586
Alignment:
Q  144 tttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||| |||||||  ||||||| ||||||||||||    
T  43431542 tttatcttttgttattgaaataacttatacattaacacttatatg 43431586  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 16982032 - 16982078
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||    
T  16982032 attttatcttttgttatcgaaataagttatacataaacacttatatg 16982078  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 27140459 - 27140417
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacactta 184  Q
    |||||||||||||||||||||||||  || |||||||||||||    
T  27140459 attttatcttttgttatagaaataacttacacataaacactta 27140417  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 871022 - 870973
Alignment:
Q  139 ttaattttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||||||||| |||||   ||||||||| ||||||||||    
T  871022 ttaattttatcttttgttataaaaatagtttatacataagcacttatatg 870973  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 15360868 - 15360827
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacactt 183  Q
    |||||||||||||||||||||||||   ||||||||||||||    
T  15360868 attttatcttttgttatagaaataactaatacataaacactt 15360827  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 4202227 - 4202271
Alignment:
Q  144 tttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    |||||||||||||||||||||||  ||||| ||| ||||||||||    
T  4202227 tttatcttttgttatagaaataacttatacttaagcacttatatg 4202271  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 13037836 - 13037792
Alignment:
Q  144 tttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||    
T  13037836 tttatcttttgttatagaaatagcttatacataagcacttatatg 13037792  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 2013173 - 2013129
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttata 186  Q
    |||||||||||||||||||||||||| ||||||||| || |||||    
T  2013173 attttatcttttgttatagaaataaattatacataagcatttata 2013129  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 44241844 - 44241788
Alignment:
Q  132 agttaaattaattttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    |||||| || ||||||||| |||||||||||||||  |||||||| |||||||||||    
T  44241844 agttaactttattttatctgttgttatagaaataacttatacatacacacttatatg 44241788  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 2223120 - 2223078
Alignment:
Q  144 tttatcttttgttatagaaataaactatacataaacacttata 186  Q
    ||||||||||||||||||||||   ||||||||||||||||||    
T  2223120 tttatcttttgttatagaaatagcttatacataaacacttata 2223078  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 4591516 - 4591471
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatat 187  Q
    |||||||||||||||||||| |||   |||||||||||||||||||    
T  4591516 attttatcttttgttatagagatagcttatacataaacacttatat 4591471  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 35809000 - 35809041
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacactt 183  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  35809000 attttatcttttgttatagaaatagcttatacataaacactt 35809041  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 2727456 - 2727496
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacact 182  Q
    ||||||||||||||||||||||||  |||||||| ||||||    
T  2727456 attttatcttttgttatagaaatagtctatacatcaacact 2727496  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 27481391 - 27481435
Alignment:
Q  143 ttttatcttttgttatagaaataaactatacataaacacttatat 187  Q
    ||||||| |||||||||||||||   |||||||||||||||||||    
T  27481391 ttttatcctttgttatagaaatagcttatacataaacacttatat 27481435  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 1170 - 1216
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||||||||||||   ||||||||| ||||||||||    
T  1170 attttatcttttgttatagaaatagcttatacataagcacttatatg 1216  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 2805 - 2759
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||||||||||||   ||||||||| ||||||||||    
T  2805 attttatcttttgttatagaaatagcttatacataagcacttatatg 2759  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 42591 - 42545
Alignment:
Q  142 attttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||    
T  42591 attttatcttttgttatagaaatgacttatacataagcacttatatg 42545  T

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Target: scaffold0508 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 9868 - 9917
Alignment:
Q  139 ttaattttatcttttgttatagaaataaactatacataaacacttatatg 188  Q
    |||||||||| |||||||||||||||||  ||||||||| ||| ||||||    
T  9868 ttaattttattttttgttatagaaataacttatacataagcacctatatg 9917  T

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