View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6305_low_5 (Length: 284)
Name: NF6305_low_5
Description: NF6305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6305_low_5 |
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| [»] scaffold0268 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 7665 - 7942
Alignment:
| Q |
8 |
tgagaagaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgcat |
107 |
Q |
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| T |
7665 |
tgagatgaaaaaagtaatggaggaagagatcgacaccgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgcat |
7764 |
T |
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| Q |
108 |
ttggccgacgaggaaaacaaagaaaatttgcttgaagtg-nnnnnnnngtggatgcggaaattgctagttgtaagaagattgccatggaggagttgtttt |
206 |
Q |
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| T |
7765 |
ttggcggacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatgcggaaattgctagttgtaagaagattgccatggaggagttgtttt |
7864 |
T |
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| Q |
207 |
tagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagc |
284 |
Q |
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| T |
7865 |
tagtaaaagaatgtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagc |
7942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 22261352 - 22261629
Alignment:
| Q |
8 |
tgagaagaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgcat |
107 |
Q |
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| T |
22261352 |
tgagatgaaaaaggtaatggaggaagagatcgacactgtgaagaaggaatttgggttggagattttaaaaatgagtaaaatcttagaagctcaagtgcat |
22261451 |
T |
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| Q |
108 |
ttggccgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnn-gtggatgcggaaattgctagttgtaagaagattgccatggaggagttgtttt |
206 |
Q |
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| T |
22261452 |
ttggccgacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatctggaaattgccatttgtaagaagattgccatggaggagttgtttt |
22261551 |
T |
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| Q |
207 |
tagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagc |
284 |
Q |
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| T |
22261552 |
tagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagc |
22261629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 15779399 - 15779122
Alignment:
| Q |
8 |
tgagaagaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgcat |
107 |
Q |
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| T |
15779399 |
tgagatgaaaaaactaatggaggaagagatcgagactgtgaagaaggaatctgagatggagatatcaaacatgaataaaatcttagaagctcaagtgcat |
15779300 |
T |
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| Q |
108 |
ttggccgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnn-gtggatgcggaaattgctagttgtaagaagattgccatggaggagttgtttt |
206 |
Q |
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| T |
15779299 |
ttggctgacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatgtggaaattgctagttttaagaagattgccatggaggagttgtttt |
15779200 |
T |
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| Q |
207 |
tagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagc |
284 |
Q |
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| T |
15779199 |
tagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagagttaggatggtcaaatagttcattgtggaagc |
15779122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 24034422 - 24034145
Alignment:
| Q |
8 |
tgagaagaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgcat |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24034422 |
tgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatttggggtggagattttaaaaatgagtaaaatcttagaagctcaagtgcat |
24034323 |
T |
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| Q |
108 |
ttggccgacgaggaaaacaaagaaaatttgcttgaagtg-nnnnnnnngtggatgcggaaattgctagttgtaagaagattgccatggaggagttgtttt |
206 |
Q |
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| T |
24034322 |
ttggccgacgaggaaaacaaataaaatttgcttgaagtgaaaaaaaatgtggatctggaaattgccatttgtaagaagattgtcatggaggagttgtttt |
24034223 |
T |
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| Q |
207 |
tagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagc |
284 |
Q |
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| T |
24034222 |
tagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagc |
24034145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 7659666 - 7659565
Alignment:
| Q |
45 |
gtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgcatttggccgacgaggaaaacaaagaaaatttgcttgaag |
144 |
Q |
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| T |
7659666 |
gtgaaaaaggaatctgagatggagatatcaaacttgaaaaacatgttagaagctcaagtgcagttggtccaggaggaaaacaaagaacatatggttgaag |
7659567 |
T |
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| Q |
145 |
tg |
146 |
Q |
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| T |
7659566 |
tg |
7659565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 17341111 - 17340842
Alignment:
| Q |
8 |
tgagaagaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgcat |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
17341111 |
tgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatttgggatggagattttaaaaatgagtaaaatcttataagctcaagtgcat |
17341012 |
T |
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| Q |
108 |
ttggccgacgaggaaaacaaagaaaatttgcttgaagtg-nnnnnnnngtggatgcggaaattgctagttgtaagaagattgccatggaggagttgtttt |
206 |
Q |
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| T |
17341011 |
ttggccgacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatctggaaattgccatttgtaagaagattgccatggaggagttgtttt |
17340912 |
T |
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| Q |
207 |
tagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcatt |
276 |
Q |
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| T |
17340911 |
tagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtccaatagttcatt |
17340842 |
T |
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