View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6305_low_6 (Length: 271)
Name: NF6305_low_6
Description: NF6305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6305_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 26652579 - 26652339
Alignment:
| Q |
14 |
catagggactaaattaaaagtaaaaatataatattcatcatcttcatctctaaatctatctatcttcgttgttcttttgggtttaaagatgaaaaaccat |
113 |
Q |
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| T |
26652579 |
catacggactaaattgaaagtaaaaaaataatattcatcatcttcatctctaaatctatctatcttcgttgttcttttgggtttaaagatgaaaaaccat |
26652480 |
T |
|
| Q |
114 |
ataagttaatcatcaaaaacaagtcgcagcacataactaa-ttgccaagacaaccgaatcactaaagcacaacagtaaaaccactgcagagaccatcttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26652479 |
gtaagttaatcatcaaaaacaagtcgcagcacataaccaatttgccaagacaaccgaatcactaaagcacaacagtaaaaccactgcagagaccatcttt |
26652380 |
T |
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| Q |
213 |
ctacccattcttggcttttttgtttctgttaacatgtataa |
253 |
Q |
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| T |
26652379 |
ctacccattcttggcttttttgtttctgttaacatgtataa |
26652339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 29980120 - 29980077
Alignment:
| Q |
85 |
ttcttttgggtttaaagatgaaaaaccatataagttaatcatca |
128 |
Q |
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| T |
29980120 |
ttcttttgggtttaaagatgaaaaactagataagttaatcatca |
29980077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 43539350 - 43539392
Alignment:
| Q |
85 |
ttcttttgggtttaaagatgaaaaaccatataagttaatcatc |
127 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||| |
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| T |
43539350 |
ttcttttgggtttaaagatgaaaaactagataagttaatcatc |
43539392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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