View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6306_high_2 (Length: 491)
Name: NF6306_high_2
Description: NF6306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6306_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 475
Target Start/End: Original strand, 1104084 - 1104547
Alignment:
| Q |
12 |
cataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaacaaactttgtgaacaatacaaatgaag |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1104084 |
cataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaacaaaatttgtgaacaatacaaatgaag |
1104183 |
T |
|
| Q |
112 |
tttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaaga |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104184 |
tttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaaga |
1104283 |
T |
|
| Q |
212 |
taatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104284 |
taatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatt |
1104383 |
T |
|
| Q |
312 |
tgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaatt |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1104384 |
tgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgaaaaggcgaagaaacatggaatt |
1104483 |
T |
|
| Q |
412 |
gtggtgtgaatgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttg |
475 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104484 |
gtggtgtgaatgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttg |
1104547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 475
Target Start/End: Original strand, 1047054 - 1047520
Alignment:
| Q |
12 |
cataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttac-tcaaat--tgtcgaaacaaactttgtgaacaatacaaatg |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| || || || |||||| |||| | ||| | ||| | |||||||||| |||||| |
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| T |
1047054 |
cataggagtggtccttggaatggagttggatttagtggagcgcctatggagattgttacatcaactgttgttgttgcaagatctgtgaacaattcaaatg |
1047153 |
T |
|
| Q |
109 |
aagtttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccaga |
208 |
Q |
| |
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| T |
1047154 |
aggtttattactcatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgcattatatggagtccaga |
1047253 |
T |
|
| Q |
209 |
agataatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctcca |
308 |
Q |
| |
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|| ||| |||||| | | |||| |||||||| |||||||||||||| |||||||| |||||| || |||||||| || ||| ||| ||||||| |
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| T |
1047254 |
ggacaatacttggagtggtattgagtcagtaccaaaagatgattgtgatgtctataatcattgtggcccatatggaaattgcatttataacccgtctcca |
1047353 |
T |
|
| Q |
309 |
atttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatgga |
408 |
Q |
| |
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||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047354 |
atttgtcaatgtttagatgggtttgagcctaaatcaccacaaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggcgaagaaacatgga |
1047453 |
T |
|
| Q |
409 |
attgtggtgtgaatgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttg |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||| |
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| T |
1047454 |
attgtggtgtgaatgatggttttggaacattttctggattgaaattgccagatacaacacatacttg |
1047520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 15 - 475
Target Start/End: Original strand, 1071870 - 1072333
Alignment:
| Q |
15 |
aggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttac-tcaaat--tgtcgaaacaaactttgtgaacaatacaaatgaag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || || | |||| |||| | | | | |||| ||||| |||| ||||||||| |
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| T |
1071870 |
aggagtggtccttggaatggagttggatttagtggagcacctatggagattattacgtcaagtgttatagctacaacacctgtgatcaattcaaatgaag |
1071969 |
T |
|
| Q |
112 |
tttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaaga |
211 |
Q |
| |
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|||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | | ||||| ||| ||||| |||||| || |
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| T |
1071970 |
tttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaacgcttagtcttcatgaacgcgttatatggagtccagagga |
1072069 |
T |
|
| Q |
212 |
taatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatt |
311 |
Q |
| |
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|| |||||| | | | || |||||||| | |||||||||||| |||||||| ||| || ||||||||||| || |||| ||| |||||||||| |
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| T |
1072070 |
caacacttggagcgatattcagtcagtaccaaaaaatgattgtgatgtctataatcgttgcggcccttatggaaattgcattcataacccgtctccaatt |
1072169 |
T |
|
| Q |
312 |
tgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaatt |
411 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1072170 |
tgccaatgtttagatgggtttgagcctaaatcaccacaaaattggtacgcatcaaattggacacaaggatgtgtgcgcaaaggtgaagaaacatggaatt |
1072269 |
T |
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| Q |
412 |
gtggtgtgaatgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttg |
475 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| | |||||||||||||| ||||||||| |||| |
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|
| T |
1072270 |
gtggtgtgaatgatcgttttagaacattttctggattgaaattgccagatacaacacatacttg |
1072333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 24 - 475
Target Start/End: Original strand, 1087540 - 1087994
Alignment:
| Q |
24 |
ccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaa---caaactttgtgaacaatacaaatgaagtttactaca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || || ||||||| |||||| | || ||| | ||||||||| ||||||||||||| |||| |
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| T |
1087540 |
ccttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattaca |
1087639 |
T |
|
| Q |
121 |
catatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaagataatgattg |
220 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| | | || |||| ||| |||||||||||||| || ||| |
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|
| T |
1087640 |
tatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacaactagtcatcgcgaacgtgttaattggattccagaagacgatacttg |
1087739 |
T |
|
| Q |
221 |
gagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgt |
320 |
Q |
| |
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||| ||| |||| | |||| |||||||||||||| |||||||| |||||| ||||||||||| || ||| ||| |||||||||||||| |||||| |
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| T |
1087740 |
gagtgttattgagtcgttgccaaaagatgattgtgatgtctataatcgttgtggcccttatggaaattgcgttcataacgagtctccaatttgccaatgt |
1087839 |
T |
|
| Q |
321 |
ttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtga |
420 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| || ||| |||| ||||| |||| |
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| T |
1087840 |
ttagatgggtttgagcctaaatcgccaaaaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggtgacgaagattggagatgtggagtga |
1087939 |
T |
|
| Q |
421 |
atgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttg |
475 |
Q |
| |
|
||||| |||||| || ||||| | | |||||||||||||| ||| ||||| |||| |
|
|
| T |
1087940 |
atgatagttttgtaagattttatggattgaaattgccagatacatcacatacttg |
1087994 |
T |
|
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