View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6306_low_1 (Length: 583)
Name: NF6306_low_1
Description: NF6306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6306_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 6 - 577
Target Start/End: Original strand, 51404719 - 51405290
Alignment:
| Q |
6 |
agaatcatcccgaggaacccgaaagcgaggaagactctgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcac |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51404719 |
agaatcatcccgaggaacccgaaagcgaggaagactctgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcac |
51404818 |
T |
|
| Q |
106 |
aaagcacgtaacaatggaatgcccttttggaacaaaaagcaaaatgatgaagatcaaatggttatcgctttccaaacctatggaaaattgaacagtgtca |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51404819 |
aaagcacgtaacaatggaatgcccttttggaacaaaaaacaaaatgatgaagatcaaatggttatcgctttccaaacctatggaaaattgaacagtgtca |
51404918 |
T |
|
| Q |
206 |
atgttcgtcccatgacagccatttctgctcttagcaacatccatgaagatatttgtactagtgctcatcaaaagcgtgcctcgataatactccttccatt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51404919 |
atgttcgtcccatgacagccatttctgctctcagcaacatccatgaagatatttgtactagtgctcatcaaaagcgtgcctcgataatactccttccatt |
51405018 |
T |
|
| Q |
306 |
ccataaacaccagcgtatcgatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcatgcaccttgttctgttgga |
405 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51405019 |
ccataaacaccagcgtatagatggaacgatggagtcattaggacattcatttcatgtaatgaatgagcttgtgttgagtcatgcaccttgttctgttgga |
51405118 |
T |
|
| Q |
406 |
attttgattgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcggaggacgcgacgatcatg |
505 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51405119 |
attttgattgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgttgtaatcttcttcggaggacgcgacgatcatg |
51405218 |
T |
|
| Q |
506 |
aagcacttgcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaagttcatttctc |
577 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51405219 |
aagcacttgcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaagttcatttctc |
51405290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 6 - 555
Target Start/End: Complemental strand, 29981982 - 29981430
Alignment:
| Q |
6 |
agaatcatcccgaggaacccgaaagcgaggaagactctgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcac |
105 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||||||| ||||||| || | |||||||| |
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| T |
29981982 |
agaatcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcat |
29981883 |
T |
|
| Q |
106 |
aaagcacgtaacaatggaatgcccttttggaacaaaaagcaaaatgatga---agatcaaatggttatcgctttccaaacctatggaaaattgaacagtg |
202 |
Q |
| |
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|| ||| | || ||||| |||| |||||||||||||| ||| |||| | ||| |||||||| || || || ||| | |||||| | || | |||| |
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| T |
29981882 |
aaggcaagaaataatggcttgcctttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtg |
29981783 |
T |
|
| Q |
203 |
tcaatgttcgtcccatgacagccatttctgctcttagcaacatccatgaagatatttgtactagtgctcatcaaaagcgtgcctcgataatactccttcc |
302 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| | ||||| |||||||| |||||| | ||||| || |||||||| | |||| || || ||||| |
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| T |
29981782 |
tcaatgttcgtagtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttcc |
29981683 |
T |
|
| Q |
303 |
attccataaacaccagcgtatcgatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcatgcaccttgttctgtt |
402 |
Q |
| |
|
|| || |||||||| || | |||||||| ||||| |||||||| || || |||| |||||||||| || || | || ||||| ||||| || ||| |
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| T |
29981682 |
gtttcacaaacaccaacgagttgatggaactatggaatcattagggcactcgtttcgcgtaatgaatggacttgtacttagccatgctccttgctcggtt |
29981583 |
T |
|
| Q |
403 |
ggaattttgattgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcggaggacgcgacgatc |
502 |
Q |
| |
|
||||||||| ||||||| || || ||||| |||| |||||| || || ||||| ||||| | || |||| |||| ||||| |||||| | || |||| |
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| T |
29981582 |
ggaattttggttgatcgtggccttggagggacaactcaagtccatgctagtgatgtttcttacaatgttgttgtagctttctttggaggatgtgatgatc |
29981483 |
T |
|
| Q |
503 |
atgaagcacttgcttatggtatgagaatggcagaacatccaggaattttactc |
555 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||| ||||||| |||| |
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|
| T |
29981482 |
gagaagcacttgcgtacggtatgagaatagcagaacatcctggaatttcactc |
29981430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 8156085 - 8156274
Alignment:
| Q |
43 |
tgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcacaaagcacgtaacaatggaatgcccttttggaacaaaa |
142 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| ||||||| || |||||||| || ||| | || ||||| |||||| |||||||||||| |
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|
| T |
8156085 |
tgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataagaatggttcataaggcaagaaataatggcatgccc-tttggaacaaaa |
8156183 |
T |
|
| Q |
143 |
agcaaaatg---atgaagatcaaatggttatcgctttccaaacctatggaaaattgaacagtgtcaatgttcgtcccatgacagccatttc |
230 |
Q |
| |
|
| ||| ||| | |||| |||||||| || || || ||| | |||||| | || | ||||||||||||||||| |||||||| ||||| |
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| T |
8156184 |
aacaacatgacaacaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgtcctatgacagcaatttc |
8156274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 36613676 - 36613530
Alignment:
| Q |
6 |
agaatcatcccgaggaacccgaaagcgaggaagactctgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcac |
105 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||||||| ||||||| || | |||||||| |
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|
| T |
36613676 |
agaatcatcaagaggaacacgaaagcgaggaaagttgtgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcat |
36613577 |
T |
|
| Q |
106 |
aaagcacgtaacaatggaatgcccttttggaacaaaaagcaaaatga |
152 |
Q |
| |
|
|| ||| | || ||||| |||||||||||||||||||| ||| |||| |
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|
| T |
36613576 |
aaggcaagaaataatggcatgcccttttggaacaaaaaacaacatga |
36613530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 7674769 - 7674915
Alignment:
| Q |
6 |
agaatcatcccgaggaacccgaaagcgaggaagactctgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcac |
105 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| | ||||| |||||||||||||| |||||||||| ||||||| ||||||| || | |||||||| |
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| T |
7674769 |
agaatcatcaagaggaacacgaaagcgaggaaagttgtgtatatatgcaatgcacttaatggaactctgagaaagaccttcagccataacaatggttcat |
7674868 |
T |
|
| Q |
106 |
aaagcacgtaacaatggaatgcccttttggaacaaaaagcaaaatga |
152 |
Q |
| |
|
|| ||| | || ||||| |||||||||||||||||||| ||| |||| |
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|
| T |
7674869 |
aaggcaagaaataatggcatgcccttttggaacaaaaaacaacatga |
7674915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 25523899 - 25523753
Alignment:
| Q |
6 |
agaatcatcccgaggaacccgaaagcgaggaagactctgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcac |
105 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||| | ||||| |||||||||||||| || ||||||||||||||| ||||||| || | |||||||| |
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|
| T |
25523899 |
agaatcatcaagaggaacacgaaagcaaggaaagttgtgtatatatgcaatgcacttaatagaactctcagaaagaccttcagccataacaatggttcat |
25523800 |
T |
|
| Q |
106 |
aaagcacgtaacaatggaatgcccttttggaacaaaaagcaaaatga |
152 |
Q |
| |
|
|| ||| | || | ||| |||||||||||||||||||| ||| |||| |
|
|
| T |
25523799 |
aaggcaagaaatattggcatgcccttttggaacaaaaaacaacatga |
25523753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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