View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6306_low_3 (Length: 488)
Name: NF6306_low_3
Description: NF6306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6306_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 470
Target Start/End: Original strand, 41763024 - 41763481
Alignment:
| Q |
14 |
ctacatagcaatgttatgaatccacgtgtggttgtatcatgtggcaagggcgtcccttataattttagataaattattgattggcatggtttagagaagt |
113 |
Q |
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| T |
41763024 |
ctacatagcaatgttatgaatccacgtgtggttgtatcatgtggcaagggcgtcccttataattttagataaattattgattggcatggtttagagaagt |
41763123 |
T |
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| Q |
114 |
cttattgatgaatgtacatgcatggattttattgatgaagacaatataattgataggtttttgcatttgatcataccaataatgcattatatactcaata |
213 |
Q |
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| T |
41763124 |
cttattgatgaatgtacatgcatggattttattgatgaagacaatataattgataggtttttgcatttgatcataccaataatgcattatatactcaata |
41763223 |
T |
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| Q |
214 |
atgaagcgggtctgacaatttggcaacaaaataaagtactcctatataacatgaatcattatttcatattcaccatccttgaagcaagcattgaac-nnn |
312 |
Q |
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| T |
41763224 |
atgaagcgggtctgacaatttggcaacaaaataaagtactcctatataacatgaatcattatttcatatttaccatccttgaagcaagcattgaactttt |
41763323 |
T |
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| Q |
313 |
nnnnggagagaacctatattatgccaaataatttcttcaatgaatactgtaaaagtttcccaatcagtttacaattcaaataatcaaaatcagctcttcc |
412 |
Q |
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| T |
41763324 |
ttttggagagaacctatattatgccaaataattttttcaatgaatactgtaaaagtttcccaatcagtttacaattcaaataatcaaaatcagctcttcc |
41763423 |
T |
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| Q |
413 |
agacaattaatacacacacaaatagagaattgaaagaagaagaaaaaacagcaggttg |
470 |
Q |
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| T |
41763424 |
agacaatcaatacacacacaaatagagaattgaaagaagaagaaaaaacagcaggttg |
41763481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 41793561 - 41793682
Alignment:
| Q |
143 |
tattgatgaagacaatataattgataggtttttgcatttgatcataccaataatgcat--tatatactcaataatgaagcgggtctgacaatttggcaac |
240 |
Q |
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| T |
41793561 |
tattgatgaagaca-tgcaattgatatgatttttcatttgatcgtaccaataatgcatattttatactcaataatgaagtgggtctaagagttttgcaac |
41793659 |
T |
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| Q |
241 |
aaaataaagtactcctatataac |
263 |
Q |
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| T |
41793660 |
aaaatcaagtactcctatataac |
41793682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 41797105 - 41797201
Alignment:
| Q |
1 |
agaataatgaaaa-ctacatagcaatgttatgaatccacgtgtggttgtatcatgtggcaagggcgtcccttataatttt--agataaattattgat |
94 |
Q |
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| T |
41797105 |
agaataatgaaaagctacgttgtaatgttatgagtccacgtttggttgtatcatgtggcaagggtggctcttataattatagagataaattattgat |
41797201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 450
Target Start/End: Original strand, 41793729 - 41793808
Alignment:
| Q |
372 |
ccaatcagtttacaattcaaa-taatcaaaatcagctcttccagacaattaatacacacacaaatagagaattgaaagaa |
450 |
Q |
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| T |
41793729 |
ccaatcagttcacaattcaaaataatcacaatcaactctcccagataatcaatatacatacaaatagagaattgaaagaa |
41793808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 41797307 - 41797354
Alignment:
| Q |
179 |
tttgatcataccaataatgcattatatactcaataatgaagcgggtct |
226 |
Q |
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| T |
41797307 |
tttgatcatatcaataatacattatatagtcaataatgaagtgggtct |
41797354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 41793399 - 41793507
Alignment:
| Q |
4 |
ataatgaaaactacatagcaatgttatgaatccacgt----gtggttgtatcatgtggcaagggcgtcccttataattttagataaattattgattggca |
99 |
Q |
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| T |
41793399 |
ataatgaaagctacatagca-tgttatgagtccacgtacgtgtggttgtatcatatggcgagggttgctcttatagt-----ataaattattgattgtca |
41793492 |
T |
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| Q |
100 |
tggtttagagaagtc |
114 |
Q |
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| T |
41793493 |
tggtttagagaagtc |
41793507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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