View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6306_low_4 (Length: 431)
Name: NF6306_low_4
Description: NF6306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6306_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 26 - 408
Target Start/End: Complemental strand, 42394110 - 42393731
Alignment:
| Q |
26 |
tggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtgaa |
125 |
Q |
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| T |
42394110 |
tggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtgaa |
42394011 |
T |
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| Q |
126 |
ggatgtagaaggaaaggaaagtgaaagtaaggannnnnnnnnnnnnnngttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccac |
225 |
Q |
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| T |
42394010 |
ggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccac |
42393911 |
T |
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| Q |
226 |
gtgaaggctcttctcctggtatgctacctttgttacacatttatgttttgcgtcttctcacttcnnnnnnnngcggtatatggtttgtttaactctgatt |
325 |
Q |
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| T |
42393910 |
gtgaaggctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcactt---ttttttgcggtatatggtttgtttaactctgatt |
42393814 |
T |
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| Q |
326 |
caaatgaaaatttatttgagaatgctaacatgtgccctaaggcgcgtgttgaagaacttaataccattgagtttgtatgaaca |
408 |
Q |
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| T |
42393813 |
caaattaaaatttatttgagaatgctaacatgtgccctaaggcgtgcgttgaagaacttaataccattgagtttgtatgaaca |
42393731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 42378197 - 42378104
Alignment:
| Q |
24 |
gttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacga |
117 |
Q |
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| T |
42378197 |
gttggcccggtttgatttgcagggtgttgtgaaagatatgaatgctttggtgcctcgctttgatgggatatttgagaagatgattggtgaacga |
42378104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 42378044 - 42377959
Alignment:
| Q |
174 |
gttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgtt |
259 |
Q |
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| T |
42378044 |
gttgaatttgaaggaggagggtgattctaagacaccgtttacaaatactcatgttaaggctctactcatggtatgctacttttgtt |
42377959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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