View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6306_low_5 (Length: 335)
Name: NF6306_low_5
Description: NF6306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6306_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 49257640 - 49257328
Alignment:
| Q |
20 |
atatgatctttttaattaatcaagttggcaactctgaggaatcttctttatttgctcaaactaatctatcctttctactgcaaaaccttcttgaaatatc |
119 |
Q |
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| T |
49257640 |
atatgatctttttaattaatcaagttggcaactctgaggaatcttctttatttgctcaaactaatctatcctttgtactgcaaaactttcttgaaatatc |
49257541 |
T |
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| Q |
120 |
ctttcccgtgccttaattgcctgcaatcatagacactcaagaaatgagtatattttaatgaatggtatatgttcaaaactcttgcagaatcttaataaga |
219 |
Q |
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| T |
49257540 |
ctttcccgtgccttaattgcctgcaatcatagacactcaagaaatgagtatattttaatgaatggtatatgttcaaaactcttgcagaatcttaataaga |
49257441 |
T |
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| Q |
220 |
tagcatggcctaagatgctagttctctgagtatgaacattgatatcttctctagtttaacatatttccttgaaaatatttagcttgacagaatttcttga |
319 |
Q |
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| T |
49257440 |
tagcatggcctaagatgctagttctctgagtatgaacattgatatcttctctagtttaacatatttccttgaaaatatttagcttgacagaatttcttga |
49257341 |
T |
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| Q |
320 |
tctgtgctgctcc |
332 |
Q |
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| T |
49257340 |
tctgagatgctcc |
49257328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 109 - 330
Target Start/End: Complemental strand, 49270532 - 49270311
Alignment:
| Q |
109 |
cttgaaatatcctttcccgtgccttaattgcctgcaatcatagacactcaagaaatgagtatattttaatgaatggtatatgttcaaaactcttgcagaa |
208 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||| || |||||| | ||||||| ||| || ||| |||||||||||| || ||||| |
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| T |
49270532 |
cttgaaatatcctttcccgtgccttgattgcctgcaatca--gacattccagaaattattatatttcaataaacagtacatgttcaaaactgttacagaa |
49270435 |
T |
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| Q |
209 |
tcttaataagatagcatggcctaagatgctagttc--tctgagtatgaacattgatatcttctctagtttaacatatttccttgaaaatatttagcttga |
306 |
Q |
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|| ||||||||||||| ||||||||||| |||||| | ||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||| |
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| T |
49270434 |
tcataataagatagcaaggcctaagatgttagttctgtttgagtatgaacataattatcttctcaagtttaacataataatgtgaaaatatttagcttga |
49270335 |
T |
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| Q |
307 |
cagaatttcttgatctgtgctgct |
330 |
Q |
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||| ||||||||||||||| |||| |
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| T |
49270334 |
caggatttcttgatctgtgatgct |
49270311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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