View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6306_low_9 (Length: 252)
Name: NF6306_low_9
Description: NF6306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6306_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 39733339 - 39733509
Alignment:
| Q |
19 |
gatataaatttcagaatcttgctaaattagtttctttccacgtgcctacctccccatcttctcattcaaattttacgtcattgatcttttctacttgact |
118 |
Q |
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| T |
39733339 |
gatataaatttcagaatcttgctaaattagtttctttccacgtgcctacctccccatcttctcattcaaattttacgtcattgaacttttctacttgact |
39733438 |
T |
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| Q |
119 |
tgaaactaccacttgtacattactctttccctgataagatatatttttggatcaaaatctgaaaataatta |
189 |
Q |
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| T |
39733439 |
tgaaactaccacttgtacattactctttccctgataagatatatttttggatcaaaatctgaaaataatta |
39733509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 39733525 - 39733560
Alignment:
| Q |
208 |
aatttaaattgtcaatgttggtattgttagtattat |
243 |
Q |
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| T |
39733525 |
aatttaaattgtcaatgttggtattgttagtattat |
39733560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 39867609 - 39867553
Alignment:
| Q |
79 |
ctcattcaaattttacgtcattgatcttttctacttgacttgaaactaccacttgta |
135 |
Q |
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| T |
39867609 |
ctcattcaaattttacgccattaaacttttctactgaacttgaagctaccacttgta |
39867553 |
T |
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