View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6307_high_5 (Length: 353)
Name: NF6307_high_5
Description: NF6307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6307_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 42838911 - 42838598
Alignment:
| Q |
15 |
aataacaacttaaagcaagatctcccttcaaagcatacagattacttagataaattacaatgttttcttctcatcatctcatttcacaacgaatcttgca |
114 |
Q |
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| T |
42838911 |
aataacaacttaaagcaagatctcccttcaaagcatacagattacttagataaattacaatgttttcttctcatcatctcatttcacaatgaatcttgca |
42838812 |
T |
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| Q |
115 |
gaacttcctgagattagaactgtaaacagcaagacatataagtaaaaaataagtattcttaatgatcactattttttccnnnnnnnttactctcagccat |
214 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42838811 |
gaacttcctgagatgagaactgtaaacagcaagacatataagtaaaaaataagtattcttaatgatcactattttttccaaaaaaattactctcagccat |
42838712 |
T |
|
| Q |
215 |
tagttgcaaaacttacaaatcagaggaaatagaagagaatctattctctttctatgttgtttatttaaattatcttggccctttttatactatattatca |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42838711 |
tagt-------------aatcagaggaaatagaagagaatctattctcttcctatgttgtttatttaaattatcttggcccttattatactatattatca |
42838625 |
T |
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| Q |
315 |
gagtacgatactctgacctgctagttc |
341 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42838624 |
gagtacgatactctgacctgctagttc |
42838598 |
T |
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