View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6307_high_8 (Length: 238)
Name: NF6307_high_8
Description: NF6307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6307_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7609990 - 7609769
Alignment:
| Q |
1 |
tacgagatagatacgaatattataacaatatgtccatacctattaattgcgggatccgcattcacttttggagagatttcatacagtttcacgatgtagt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7609990 |
tacgagatagatatgaatattataacaatatgtccatacccatcaattgcgggacctgcattcacttttggagagatttcatacagtttcacgatgtagt |
7609891 |
T |
|
| Q |
101 |
aaatcttaaccataatttaaaatagagtttaaatttcaaacacaattttacgcggtaaaatgatttcgaccaccaatttatatgatcgaacggtccaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7609890 |
aaatcttaaccataatttaaaatagagtttaaatttcaaacacaattttacgcggtaaaataatttcgaccaccaatttatatgatcgaacggtccaaat |
7609791 |
T |
|
| Q |
201 |
cagttacaatgtcctctataac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7609790 |
cagttacaatgtcctctataac |
7609769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University