View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6307_low_1 (Length: 777)
Name: NF6307_low_1
Description: NF6307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6307_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 444 - 646
Target Start/End: Complemental strand, 285700 - 285497
Alignment:
| Q |
444 |
attaagcaaaaaatgaacnnnnnnnnaataaataaaaataatcattagatgagtaatgttcggttgacttttccgaactgatgactaatactcaaaagca |
543 |
Q |
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| T |
285700 |
attaagcaaaaaatgaacttttttttaataaataaaaataatcattagatgagtaatgttcggttgacttttccgaactgatgactaatactcaaaagca |
285601 |
T |
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| Q |
544 |
ctatcacaaagtaccaaccaacacaacaataattattcctt-nnnnnnnnnnncacaacaataattatatagagaaatgatatttgtacattcattttgg |
642 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
285600 |
ctaccacaaagtaccaaccaacacaacaataattattccttaaaaaaaaaaaacacaacaataattatttagagaaatgatatttgtacattcattttgg |
285501 |
T |
|
| Q |
643 |
aaca |
646 |
Q |
| |
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|||| |
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| T |
285500 |
aaca |
285497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 260 - 388
Target Start/End: Complemental strand, 286040 - 285911
Alignment:
| Q |
260 |
cataccagctaattactgtttgcggatgagtgcgtctcagagattttcgcaaaccctaaaccaaaaattagat-ttttaagtttggagagagaacaaatg |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
286040 |
cataccagctaattactgtttgcggatgagtgcgtctcagagattttcgcaaaccctaaaccaaaaattagattttttaagtttggagagagaacaaatg |
285941 |
T |
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| Q |
359 |
aagcctgtgaactgacgagaggcacacaag |
388 |
Q |
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| T |
285940 |
aagcctgtgaaccgacgagaggcacacaag |
285911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 286303 - 286112
Alignment:
| Q |
18 |
agcttcatcttcttttggtgccatagtaagtaaataactctcactgat----------------tgaataaattacaaaacttagctaaaaccatgaatg |
101 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
286303 |
agcttcatcttctttaggtgccatagtaagtaaataactctcactgatatcatattatattaattcaataaattacaaaacttagctaaaaccatgaatg |
286204 |
T |
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| Q |
102 |
aa-----attaacaataatagtattagtaaagtttccaaaattgtgcaaagtgtacaacacgcaaatttggatgtcccacaccaacaagacat |
189 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
286203 |
aattgaaattaacaataatagtattagtaaagtttccaaaattgtgcaaagtgtacaacacgcaaattt-gatgtcccacaccaacaagacat |
286112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 285822 - 285776
Alignment:
| Q |
397 |
taaatactattggtatgtttttaactttttatgcttaatttaattta |
443 |
Q |
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| T |
285822 |
taaatactattggtatgtttttaactttttatccttaatttaattta |
285776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 725 - 759
Target Start/End: Original strand, 29632543 - 29632577
Alignment:
| Q |
725 |
gaccaataaaaatagagaaaattgaaattgtcata |
759 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |
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|
| T |
29632543 |
gaccaataaaaatagagaaaattgaagttgtcata |
29632577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 758
Target Start/End: Complemental strand, 10184088 - 10184055
Alignment:
| Q |
725 |
gaccaataaaaatagagaaaattgaaattgtcat |
758 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
10184088 |
gaccaataaaaatagagaaaattgaagttgtcat |
10184055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 758
Target Start/End: Original strand, 6239475 - 6239508
Alignment:
| Q |
725 |
gaccaataaaaatagagaaaattgaaattgtcat |
758 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
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|
| T |
6239475 |
gaccaataaaaatagagaaaattgaagttgtcat |
6239508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 758
Target Start/End: Original strand, 48722180 - 48722213
Alignment:
| Q |
725 |
gaccaataaaaatagagaaaattgaaattgtcat |
758 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
48722180 |
gaccaatagaaatagagaaaattgaaattgtcat |
48722213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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