View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6307_low_3 (Length: 481)
Name: NF6307_low_3
Description: NF6307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6307_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 280058 - 279585
Alignment:
| Q |
18 |
gcttctcctttctgaaggcctatcaagtccaagactacggggtttgtaccatcaggggtcttgaaagtagtcttataccaagtcattggtactcctatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
280058 |
gcttctcctttctgaaggcctatcaagtccaagactacggggtttgtaccatcaggggtcttgaaagtagtcttataccaagtcattggtactcctatag |
279959 |
T |
|
| Q |
118 |
aaacattatttgttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279958 |
aaacattatttgttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattt |
279859 |
T |
|
| Q |
218 |
tgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaattt |
317 |
Q |
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| T |
279858 |
tgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaattt |
279759 |
T |
|
| Q |
318 |
gcatgaccaactgtaacacttaataaacttataatattggtaccttgatttaaagagatgttcccttcatgtataaa------------------accat |
399 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
279758 |
gcatgacctactgtaacacttaataaacttataatattggtaccttgatttaaagagatgttcccttcatgtataaaaccaggttgactaacggtaccat |
279659 |
T |
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| Q |
400 |
gttgtgtacccgtaaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgct |
473 |
Q |
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| T |
279658 |
gttgtgtacccgtcaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgct |
279585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 30 - 373
Target Start/End: Complemental strand, 290491 - 290148
Alignment:
| Q |
30 |
tgaaggcctatcaagtccaagactacggggtttgtaccatcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttg |
129 |
Q |
| |
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||||| |||||||| |||| |||||| |||||| ||| ||||||||||||||||| ||||| ||||||||||||||| || |||||||||||||| || |
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| T |
290491 |
tgaagacctatcaaatccaggactacaaggtttgaaccttcaggggtcttgaaagtggtcttgtaccaagtcattggtccttctatagaaacattacgtg |
290392 |
T |
|
| Q |
130 |
ttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaa |
229 |
Q |
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||| |||| ||||| || |||| | ||||||||||||||||||| ||| || |||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
290391 |
tttgccatggaactacattggtagatttgggatcatagaactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaa |
290292 |
T |
|
| Q |
230 |
aacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaact |
329 |
Q |
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|||||||||||||| ||| |||||| |||||| ||||||| |||||||| |||||||||| |||||||| | || ||| |||||| | |||| | |
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| T |
290291 |
aacattgtttggatattcagttgaaatgagtttcgcaggaccgccaacaataccagtttctttcatatcaatgtacccactacaatttgatttgccaagt |
290192 |
T |
|
| Q |
330 |
gtaacacttaataaacttataatattggtaccttgatttaaaga |
373 |
Q |
| |
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||||||||||| |||||||||||||||| |||||| || ||||| |
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| T |
290191 |
gtaacacttaacaaacttataatattggcaccttgtttcaaaga |
290148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 24532215 - 24531886
Alignment:
| Q |
30 |
tgaaggcctatcaagtccaagactacggggtttgtaccatcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttg |
129 |
Q |
| |
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|||||||||||||| |||| |||||| |||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| || |
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| T |
24532215 |
tgaaggcctatcaaatccaggactacaaggtttgacccttcaggggtcttgaaagtggtcttgtaccaagtcattggtactcctatagaaacattacgtg |
24532116 |
T |
|
| Q |
130 |
ttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaa |
229 |
Q |
| |
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| ||||| |||||||| | | ||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
24532115 |
gtatccatggaactccattaga---tttgggatcatagaactttctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaa |
24532019 |
T |
|
| Q |
230 |
aacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaact |
329 |
Q |
| |
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|||||||| ||||| ||| ||||||| |||||| ||| ||||||||||||| |||||||||| |||||||| |||| ||| |||||| | ||||| | |
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| T |
24532018 |
aacattgtctggatattcaattgaaatgagtttaacatgacccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaagt |
24531919 |
T |
|
| Q |
330 |
gtaacacttaataaacttataatattggtacct |
362 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
24531918 |
gtaacacttaataaacttataatattggtacct |
24531886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 24525543 - 24525213
Alignment:
| Q |
30 |
tgaaggcctatcaagtccaagactacggggtttgtaccatcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttg |
129 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||| || | ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| || |
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| T |
24525543 |
tgaaggcctatcaaatccaggactacaaggtttgaccctttaggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtg |
24525444 |
T |
|
| Q |
130 |
ttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaa |
229 |
Q |
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| ||||| |||||||| | | | ||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525443 |
gtatccatggaactccattaga---tctgggatcttagaactttctagccataccattcatcccaactttgtacgaccaagtagattttgataaatccaa |
24525347 |
T |
|
| Q |
230 |
aacattgtttggattttcgattgaaaagagttttacagga-cccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaac |
328 |
Q |
| |
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|||||||| ||||| ||| ||||||| |||||| ||| || ||||||||||| |||||||||| |||||||| |||| ||| |||||| | ||||| |
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| T |
24525346 |
aacattgtctggatattcaattgaaatgagtttcacatgaccccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaag |
24525247 |
T |
|
| Q |
329 |
tgtaacacttaataaacttataatattggtacct |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
24525246 |
tgtaacacttaataaacttataatattggtacct |
24525213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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